Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSX1P28360 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSX1P28360 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MSX1P28360 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
MSX1P28360 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.4■□□□□ 0.86
MSX1P28360 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSX1P28360 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
MSX1P28360 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
MSX1P28360 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MSX1P28360 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.4■□□□□ 0.86
MSX1P28360 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.4■□□□□ 0.86
MSX1P28360 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
MSX1P28360 LINC01529-204ENST00000636474 1715 ntBASIC20.4■□□□□ 0.86
MSX1P28360 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.4■□□□□ 0.86
MSX1P28360 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
MSX1P28360 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.39■□□□□ 0.86
MSX1P28360 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.39■□□□□ 0.86
MSX1P28360 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
MSX1P28360 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.39■□□□□ 0.85
MSX1P28360 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.39■□□□□ 0.85
MSX1P28360 DUX4L4-201ENST00000566884 1269 ntBASIC20.39■□□□□ 0.85
MSX1P28360 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.39■□□□□ 0.85
MSX1P28360 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.39■□□□□ 0.85
MSX1P28360 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MSX1P28360 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.38■□□□□ 0.85
MSX1P28360 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.38■□□□□ 0.85
MSX1P28360 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.38■□□□□ 0.85
MSX1P28360 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.38■□□□□ 0.85
MSX1P28360 AL355001.2-201ENST00000620617 1191 ntBASIC20.38■□□□□ 0.85
MSX1P28360 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSX1P28360 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.38■□□□□ 0.85
MSX1P28360 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MSX1P28360 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MSX1P28360 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
MSX1P28360 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
MSX1P28360 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSX1P28360 AC026271.2-201ENST00000428091 497 ntBASIC20.37■□□□□ 0.85
MSX1P28360 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MSX1P28360 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.37■□□□□ 0.85
MSX1P28360 AC024257.2-201ENST00000549699 147 ntBASIC20.37■□□□□ 0.85
MSX1P28360 AC092666.2-201ENST00000613287 246 ntBASIC20.37■□□□□ 0.85
MSX1P28360 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MSX1P28360 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
MSX1P28360 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
MSX1P28360 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.37■□□□□ 0.85
MSX1P28360 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.37■□□□□ 0.85
MSX1P28360 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSX1P28360 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSX1P28360 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSX1P28360 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.36■□□□□ 0.85
MSX1P28360 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
MSX1P28360 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MSX1P28360 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MSX1P28360 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.36■□□□□ 0.85
MSX1P28360 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.36■□□□□ 0.85
MSX1P28360 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MSX1P28360 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.36■□□□□ 0.85
MSX1P28360 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
MSX1P28360 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
MSX1P28360 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSX1P28360 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSX1P28360 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
MSX1P28360 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
MSX1P28360 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
MSX1P28360 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.35■□□□□ 0.85
MSX1P28360 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
MSX1P28360 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.35■□□□□ 0.85
MSX1P28360 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSX1P28360 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.35■□□□□ 0.85
MSX1P28360 DUX4L19-201ENST00000557448 1267 ntBASIC20.35■□□□□ 0.85
MSX1P28360 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
MSX1P28360 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSX1P28360 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.35■□□□□ 0.85
MSX1P28360 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSX1P28360 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MSX1P28360 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
MSX1P28360 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSX1P28360 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
MSX1P28360 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSX1P28360 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSX1P28360 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
MSX1P28360 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSX1P28360 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSX1P28360 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
MSX1P28360 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.34■□□□□ 0.85
MSX1P28360 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MSX1P28360 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.34■□□□□ 0.85
MSX1P28360 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.33■□□□□ 0.85
MSX1P28360 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
MSX1P28360 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
MSX1P28360 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
MSX1P28360 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
MSX1P28360 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.33■□□□□ 0.85
MSX1P28360 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
MSX1P28360 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
MSX1P28360 AL353803.4-201ENST00000565882 1934 ntBASIC20.33■□□□□ 0.84
MSX1P28360 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSX1P28360 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MSX1P28360 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.32■□□□□ 0.84
MSX1P28360 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms