Protein–RNA interactions for Protein: P22362

CCL1, C-C motif chemokine 1, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL1P22362 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCL1P22362 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCL1P22362 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CCL1P22362 BX664725.1-201ENST00000438252 379 ntBASIC19.27■□□□□ 0.68
CCL1P22362 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CCL1P22362 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.27■□□□□ 0.68
CCL1P22362 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CCL1P22362 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.27■□□□□ 0.68
CCL1P22362 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CCL1P22362 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CCL1P22362 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC19.26■□□□□ 0.67
CCL1P22362 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCL1P22362 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCL1P22362 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CCL1P22362 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.26■□□□□ 0.67
CCL1P22362 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.26■□□□□ 0.67
CCL1P22362 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCL1P22362 PRTG-204ENST00000561292 833 ntTSL 3 BASIC19.26■□□□□ 0.67
CCL1P22362 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CCL1P22362 FP325331.1-202ENST00000623531 1380 ntBASIC19.26■□□□□ 0.67
CCL1P22362 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCL1P22362 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCL1P22362 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCL1P22362 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.25■□□□□ 0.67
CCL1P22362 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.25■□□□□ 0.67
CCL1P22362 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.25■□□□□ 0.67
CCL1P22362 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CCL1P22362 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CCL1P22362 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCL1P22362 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.25■□□□□ 0.67
CCL1P22362 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.25■□□□□ 0.67
CCL1P22362 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCL1P22362 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC19.25■□□□□ 0.67
CCL1P22362 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.25■□□□□ 0.67
CCL1P22362 LINC01529-204ENST00000636474 1715 ntBASIC19.25■□□□□ 0.67
CCL1P22362 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCL1P22362 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCL1P22362 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.24■□□□□ 0.67
CCL1P22362 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CCL1P22362 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCL1P22362 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCL1P22362 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.24■□□□□ 0.67
CCL1P22362 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CCL1P22362 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCL1P22362 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.24■□□□□ 0.67
CCL1P22362 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCL1P22362 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCL1P22362 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCL1P22362 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.24■□□□□ 0.67
CCL1P22362 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCL1P22362 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.24■□□□□ 0.67
CCL1P22362 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCL1P22362 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCL1P22362 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCL1P22362 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.23■□□□□ 0.67
CCL1P22362 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
CCL1P22362 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.23■□□□□ 0.67
CCL1P22362 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCL1P22362 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.23■□□□□ 0.67
CCL1P22362 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CCL1P22362 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCL1P22362 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCL1P22362 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCL1P22362 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CCL1P22362 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCL1P22362 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CCL1P22362 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCL1P22362 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCL1P22362 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.22■□□□□ 0.67
CCL1P22362 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCL1P22362 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCL1P22362 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.22■□□□□ 0.67
CCL1P22362 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CCL1P22362 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.22■□□□□ 0.67
CCL1P22362 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CCL1P22362 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCL1P22362 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CCL1P22362 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCL1P22362 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCL1P22362 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
CCL1P22362 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCL1P22362 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.21■□□□□ 0.67
CCL1P22362 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCL1P22362 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCL1P22362 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.21■□□□□ 0.67
CCL1P22362 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.21■□□□□ 0.67
CCL1P22362 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
CCL1P22362 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CCL1P22362 LINC00565-201ENST00000562710 2331 ntBASIC19.21■□□□□ 0.67
CCL1P22362 AC092028.1-203ENST00000608262 953 ntBASIC19.21■□□□□ 0.67
CCL1P22362 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCL1P22362 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCL1P22362 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCL1P22362 AC087742.1-201ENST00000575880 1738 ntBASIC19.2■□□□□ 0.66
CCL1P22362 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCL1P22362 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCL1P22362 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCL1P22362 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CCL1P22362 Z92544.1-202ENST00000571933 1220 ntBASIC19.2■□□□□ 0.66
CCL1P22362 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms