Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC38.92■■■■□ 3.82
CUX2O14529 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC38.92■■■■□ 3.82
CUX2O14529 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC38.92■■■■□ 3.82
CUX2O14529 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC38.92■■■■□ 3.82
CUX2O14529 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC38.91■■■■□ 3.82
CUX2O14529 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC38.91■■■■□ 3.82
CUX2O14529 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC38.91■■■■□ 3.82
CUX2O14529 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC38.91■■■■□ 3.82
CUX2O14529 MAZ-216ENST00000616501 991 ntTSL 5 BASIC38.91■■■■□ 3.82
CUX2O14529 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC38.91■■■■□ 3.82
CUX2O14529 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC38.9■■■■□ 3.82
CUX2O14529 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC38.9■■■■□ 3.82
CUX2O14529 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC38.89■■■■□ 3.82
CUX2O14529 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC38.89■■■■□ 3.82
CUX2O14529 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC38.89■■■■□ 3.82
CUX2O14529 AC097639.1-201ENST00000565519 1891 ntBASIC38.88■■■■□ 3.82
CUX2O14529 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC38.88■■■■□ 3.81
CUX2O14529 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC38.88■■■■□ 3.81
CUX2O14529 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC38.88■■■■□ 3.81
CUX2O14529 AC105233.4-201ENST00000642045 216 ntBASIC38.88■■■■□ 3.81
CUX2O14529 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC38.88■■■■□ 3.81
CUX2O14529 ERN1-208ENST00000606895 2068 ntBASIC38.88■■■■□ 3.81
CUX2O14529 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC38.88■■■■□ 3.81
CUX2O14529 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC38.88■■■■□ 3.81
CUX2O14529 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC38.87■■■■□ 3.81
CUX2O14529 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC38.87■■■■□ 3.81
CUX2O14529 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC38.87■■■■□ 3.81
CUX2O14529 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC38.87■■■■□ 3.81
CUX2O14529 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC38.87■■■■□ 3.81
CUX2O14529 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC38.87■■■■□ 3.81
CUX2O14529 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC38.87■■■■□ 3.81
CUX2O14529 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC38.87■■■■□ 3.81
CUX2O14529 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC38.86■■■■□ 3.81
CUX2O14529 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC38.86■■■■□ 3.81
CUX2O14529 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC38.86■■■■□ 3.81
CUX2O14529 AC010331.1-201ENST00000611423 582 ntBASIC38.86■■■■□ 3.81
CUX2O14529 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC38.85■■■■□ 3.81
CUX2O14529 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC38.85■■■■□ 3.81
CUX2O14529 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC38.85■■■■□ 3.81
CUX2O14529 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC38.85■■■■□ 3.81
CUX2O14529 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC38.85■■■■□ 3.81
CUX2O14529 MFF-208ENST00000409616 1247 ntTSL 5 BASIC38.85■■■■□ 3.81
CUX2O14529 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC38.85■■■■□ 3.81
CUX2O14529 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC38.85■■■■□ 3.81
CUX2O14529 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC38.85■■■■□ 3.81
CUX2O14529 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC38.85■■■■□ 3.81
CUX2O14529 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC38.85■■■■□ 3.81
CUX2O14529 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC38.84■■■■□ 3.81
CUX2O14529 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC38.84■■■■□ 3.81
CUX2O14529 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC38.84■■■■□ 3.81
CUX2O14529 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC38.84■■■■□ 3.81
CUX2O14529 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC38.84■■■■□ 3.81
CUX2O14529 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC38.83■■■■□ 3.81
CUX2O14529 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC38.83■■■■□ 3.81
CUX2O14529 DUSP5P2-201ENST00000426873 1033 ntBASIC38.83■■■■□ 3.81
CUX2O14529 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC38.83■■■■□ 3.81
CUX2O14529 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC38.83■■■■□ 3.81
CUX2O14529 MAX-217ENST00000557277 728 ntTSL 3 BASIC38.83■■■■□ 3.81
CUX2O14529 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC38.83■■■■□ 3.81
CUX2O14529 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC38.83■■■■□ 3.81
CUX2O14529 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC38.83■■■■□ 3.81
CUX2O14529 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC38.83■■■■□ 3.81
CUX2O14529 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC38.83■■■■□ 3.81
CUX2O14529 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC38.82■■■■□ 3.81
CUX2O14529 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC38.82■■■■□ 3.81
CUX2O14529 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC38.82■■■■□ 3.81
CUX2O14529 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC38.82■■■■□ 3.81
CUX2O14529 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC38.82■■■■□ 3.81
CUX2O14529 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC38.82■■■■□ 3.8
CUX2O14529 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC38.82■■■■□ 3.8
CUX2O14529 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC38.82■■■■□ 3.8
CUX2O14529 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC38.82■■■■□ 3.8
CUX2O14529 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC38.81■■■■□ 3.8
CUX2O14529 STK32C-205ENST00000456004 607 ntTSL 2 BASIC38.81■■■■□ 3.8
CUX2O14529 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
CUX2O14529 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC38.81■■■■□ 3.8
CUX2O14529 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC38.81■■■■□ 3.8
CUX2O14529 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC38.81■■■■□ 3.8
CUX2O14529 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC38.8■■■■□ 3.8
CUX2O14529 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC38.8■■■■□ 3.8
CUX2O14529 AC231657.2-201ENST00000624556 255 ntBASIC38.8■■■■□ 3.8
CUX2O14529 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC38.79■■■■□ 3.8
CUX2O14529 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC38.79■■■■□ 3.8
CUX2O14529 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC38.79■■■■□ 3.8
CUX2O14529 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC38.79■■■■□ 3.8
CUX2O14529 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC38.79■■■■□ 3.8
CUX2O14529 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC38.79■■■■□ 3.8
CUX2O14529 FAM210CP-201ENST00000445714 574 ntBASIC38.79■■■■□ 3.8
CUX2O14529 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC38.79■■■■□ 3.8
CUX2O14529 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC38.79■■■■□ 3.8
CUX2O14529 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC38.79■■■■□ 3.8
CUX2O14529 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC38.79■■■■□ 3.8
CUX2O14529 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC38.79■■■■□ 3.8
CUX2O14529 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8
CUX2O14529 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC38.78■■■■□ 3.8
CUX2O14529 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC38.78■■■■□ 3.8
CUX2O14529 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8
CUX2O14529 RHEB-204ENST00000472642 900 ntTSL 3 BASIC38.78■■■■□ 3.8
CUX2O14529 RPS2P4-201ENST00000476944 856 ntBASIC38.78■■■■□ 3.8
CUX2O14529 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC38.77■■■■□ 3.8
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms