Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV39A0A0B4J263 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV39A0A0B4J263 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV39A0A0B4J263 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV39A0A0B4J263 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.66■□□□□ 0.58
TRAV39A0A0B4J263 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC18.66■□□□□ 0.58
TRAV39A0A0B4J263 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV39A0A0B4J263 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.66■□□□□ 0.58
TRAV39A0A0B4J263 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV39A0A0B4J263 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV39A0A0B4J263 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
TRAV39A0A0B4J263 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
TRAV39A0A0B4J263 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV39A0A0B4J263 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
TRAV39A0A0B4J263 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC18.65■□□□□ 0.58
TRAV39A0A0B4J263 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
TRAV39A0A0B4J263 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV39A0A0B4J263 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
TRAV39A0A0B4J263 AC239859.2-201ENST00000444165 318 ntBASIC18.65■□□□□ 0.58
TRAV39A0A0B4J263 AL451085.2-201ENST00000605085 799 ntBASIC18.65■□□□□ 0.58
TRAV39A0A0B4J263 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRAV39A0A0B4J263 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
TRAV39A0A0B4J263 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.65■□□□□ 0.58
TRAV39A0A0B4J263 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TRAV39A0A0B4J263 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TRAV39A0A0B4J263 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
TRAV39A0A0B4J263 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
TRAV39A0A0B4J263 CLTA-206ENST00000466396 695 ntTSL 2 BASIC18.64■□□□□ 0.57
TRAV39A0A0B4J263 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV39A0A0B4J263 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC18.64■□□□□ 0.57
TRAV39A0A0B4J263 EP400NL-214ENST00000641289 2402 ntBASIC18.64■□□□□ 0.57
TRAV39A0A0B4J263 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV39A0A0B4J263 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
TRAV39A0A0B4J263 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRAV39A0A0B4J263 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV39A0A0B4J263 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV39A0A0B4J263 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV39A0A0B4J263 AC009299.2-201ENST00000482477 511 ntBASIC18.63■□□□□ 0.57
TRAV39A0A0B4J263 KRT125P-201ENST00000546827 989 ntBASIC18.63■□□□□ 0.57
TRAV39A0A0B4J263 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
TRAV39A0A0B4J263 MIR4787-201ENST00000607364 84 ntBASIC18.63■□□□□ 0.57
TRAV39A0A0B4J263 AC092028.1-203ENST00000608262 953 ntBASIC18.63■□□□□ 0.57
TRAV39A0A0B4J263 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC18.63■□□□□ 0.57
TRAV39A0A0B4J263 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
TRAV39A0A0B4J263 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV39A0A0B4J263 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
TRAV39A0A0B4J263 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRAV39A0A0B4J263 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV39A0A0B4J263 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV39A0A0B4J263 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV39A0A0B4J263 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV39A0A0B4J263 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV39A0A0B4J263 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV39A0A0B4J263 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC18.62■□□□□ 0.57
TRAV39A0A0B4J263 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV39A0A0B4J263 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC18.62■□□□□ 0.57
TRAV39A0A0B4J263 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC18.62■□□□□ 0.57
TRAV39A0A0B4J263 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
TRAV39A0A0B4J263 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRAV39A0A0B4J263 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC18.61■□□□□ 0.57
TRAV39A0A0B4J263 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV39A0A0B4J263 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV39A0A0B4J263 AL117328.2-201ENST00000624617 1940 ntBASIC18.61■□□□□ 0.57
TRAV39A0A0B4J263 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV39A0A0B4J263 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC18.61■□□□□ 0.57
TRAV39A0A0B4J263 AC005703.6-201ENST00000623265 1329 ntBASIC18.61■□□□□ 0.57
TRAV39A0A0B4J263 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV39A0A0B4J263 TSPY9P-201ENST00000440215 945 ntBASIC18.61■□□□□ 0.57
TRAV39A0A0B4J263 TSPY11P-201ENST00000442607 1045 ntBASIC18.61■□□□□ 0.57
TRAV39A0A0B4J263 MIR6722-201ENST00000617286 78 ntBASIC18.61■□□□□ 0.57
TRAV39A0A0B4J263 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV39A0A0B4J263 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV39A0A0B4J263 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV39A0A0B4J263 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC18.6■□□□□ 0.57
TRAV39A0A0B4J263 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC18.6■□□□□ 0.57
TRAV39A0A0B4J263 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
TRAV39A0A0B4J263 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV39A0A0B4J263 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
TRAV39A0A0B4J263 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.6■□□□□ 0.57
TRAV39A0A0B4J263 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV39A0A0B4J263 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.6■□□□□ 0.57
TRAV39A0A0B4J263 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV39A0A0B4J263 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV39A0A0B4J263 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV39A0A0B4J263 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.6■□□□□ 0.57
TRAV39A0A0B4J263 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV39A0A0B4J263 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV39A0A0B4J263 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV39A0A0B4J263 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV39A0A0B4J263 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV39A0A0B4J263 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV39A0A0B4J263 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV39A0A0B4J263 HES6-204ENST00000409182 863 ntTSL 2 BASIC18.59■□□□□ 0.57
TRAV39A0A0B4J263 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC18.59■□□□□ 0.57
TRAV39A0A0B4J263 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC18.59■□□□□ 0.57
TRAV39A0A0B4J263 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
TRAV39A0A0B4J263 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
TRAV39A0A0B4J263 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV39A0A0B4J263 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV39A0A0B4J263 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 132.1 ms