Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC12.2□□□□□ -0.46
SOX2P48431 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC12.2□□□□□ -0.46
SOX2P48431 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC12.2□□□□□ -0.46
SOX2P48431 AC079178.1-201ENST00000420915 656 ntBASIC12.2□□□□□ -0.46
SOX2P48431 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
SOX2P48431 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC12.2□□□□□ -0.46
SOX2P48431 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC12.2□□□□□ -0.46
SOX2P48431 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 SCARNA21-201ENST00000517026 139 ntBASIC12.2□□□□□ -0.46
SOX2P48431 USB1-203ENST00000539737 1212 ntTSL 2 BASIC12.2□□□□□ -0.46
SOX2P48431 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 AC023310.1-201ENST00000554836 735 ntBASIC12.2□□□□□ -0.46
SOX2P48431 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC12.2□□□□□ -0.46
SOX2P48431 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC12.2□□□□□ -0.46
SOX2P48431 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC12.2□□□□□ -0.46
SOX2P48431 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC12.2□□□□□ -0.46
SOX2P48431 AC244157.2-201ENST00000616239 1006 ntBASIC12.2□□□□□ -0.46
SOX2P48431 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
SOX2P48431 IGHV3-72-202ENST00000621503 303 ntBASIC12.2□□□□□ -0.46
SOX2P48431 AL161773.1-201ENST00000624845 863 ntBASIC12.2□□□□□ -0.46
SOX2P48431 ZNF124-202ENST00000472531 2243 ntTSL 2 BASIC12.2□□□□□ -0.46
SOX2P48431 SPTB-203ENST00000389721 6705 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC12.2□□□□□ -0.46
SOX2P48431 IKBKB-218ENST00000520835 2403 ntTSL 2 BASIC12.2□□□□□ -0.46
SOX2P48431 TRIM35-201ENST00000305364 4229 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 MYRIP-201ENST00000302541 5077 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 AC015819.3-201ENST00000624305 2674 ntBASIC12.2□□□□□ -0.46
SOX2P48431 KANK4-201ENST00000317477 2080 ntTSL 2 BASIC12.2□□□□□ -0.46
SOX2P48431 AC008040.5-201ENST00000599781 1781 ntBASIC12.2□□□□□ -0.46
SOX2P48431 AL390066.1-201ENST00000456414 2302 ntTSL 2 BASIC12.2□□□□□ -0.46
SOX2P48431 DNAJB12-202ENST00000394903 3198 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 PLOD2-201ENST00000282903 3732 ntAPPRIS P4 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 PRICKLE1-216ENST00000640132 4278 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
SOX2P48431 TPO-202ENST00000345913 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 SLC26A8-202ENST00000394602 3144 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 CD38-201ENST00000226279 5668 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SOX2P48431 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC12.19□□□□□ -0.46
SOX2P48431 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 PRKAB1-205ENST00000540121 1673 ntTSL 5 BASIC12.19□□□□□ -0.46
SOX2P48431 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC12.19□□□□□ -0.46
SOX2P48431 FAM86JP-201ENST00000467239 1910 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
SOX2P48431 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 GHITM-201ENST00000372134 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
SOX2P48431 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 STAT3-203ENST00000404395 2633 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 MSH6-210ENST00000540021 3930 ntTSL 2 BASIC12.19□□□□□ -0.46
SOX2P48431 AC004147.4-201ENST00000636421 1844 ntTSL 5 BASIC12.19□□□□□ -0.46
SOX2P48431 TRIM37-203ENST00000393066 3622 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC12.19□□□□□ -0.46
SOX2P48431 PCDHB17P-202ENST00000623466 3066 ntBASIC12.19□□□□□ -0.46
SOX2P48431 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
SOX2P48431 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC12.19□□□□□ -0.46
SOX2P48431 RPL7P3-201ENST00000441388 714 ntBASIC12.19□□□□□ -0.46
SOX2P48431 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC12.19□□□□□ -0.46
SOX2P48431 CROCCP4-201ENST00000457096 498 ntBASIC12.19□□□□□ -0.46
SOX2P48431 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC12.19□□□□□ -0.46
SOX2P48431 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC12.19□□□□□ -0.46
SOX2P48431 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC12.19□□□□□ -0.46
SOX2P48431 AP000812.2-201ENST00000538934 718 ntBASIC12.19□□□□□ -0.46
SOX2P48431 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC12.19□□□□□ -0.46
SOX2P48431 COQ6-210ENST00000554920 649 ntTSL 3 BASIC12.19□□□□□ -0.46
SOX2P48431 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC12.19□□□□□ -0.46
SOX2P48431 GREM1-201ENST00000560677 623 ntTSL 4 BASIC12.19□□□□□ -0.46
SOX2P48431 SKA2-205ENST00000580541 689 ntTSL 3 BASIC12.19□□□□□ -0.46
SOX2P48431 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC12.19□□□□□ -0.46
SOX2P48431 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC12.19□□□□□ -0.46
SOX2P48431 LAMB3-201ENST00000356082 4055 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 MIER2-201ENST00000264819 6884 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC12.19□□□□□ -0.46
SOX2P48431 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
SOX2P48431 KCNIP3-202ENST00000360990 2798 ntTSL 5 BASIC12.19□□□□□ -0.46
SOX2P48431 KRT15-202ENST00000393974 3758 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 KCNH1-205ENST00000638498 3479 ntTSL 5 BASIC12.19□□□□□ -0.46
SOX2P48431 TXNDC17-201ENST00000250101 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC12.19□□□□□ -0.46
SOX2P48431 SERPINB1-201ENST00000380739 2619 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SOX2P48431 AC134772.2-202ENST00000634384 3585 ntTSL 2 BASIC12.19□□□□□ -0.46
SOX2P48431 ATP7B-202ENST00000344297 5861 ntTSL 5 BASIC12.18□□□□□ -0.46
SOX2P48431 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC12.18□□□□□ -0.46
SOX2P48431 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC12.18□□□□□ -0.46
SOX2P48431 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 GMEB2-201ENST00000266068 4559 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
SOX2P48431 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
SOX2P48431 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms