Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
COL9A1P20849 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.13□□□□□ -0.15
COL9A1P20849 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC14.13□□□□□ -0.15
COL9A1P20849 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC14.13□□□□□ -0.15
COL9A1P20849 AC068760.1-201ENST00000493579 1953 ntBASIC14.13□□□□□ -0.15
COL9A1P20849 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
COL9A1P20849 ARR3-201ENST00000307959 1292 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC14.13□□□□□ -0.15
COL9A1P20849 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
COL9A1P20849 AL391903.1-201ENST00000407513 365 ntBASIC14.13□□□□□ -0.15
COL9A1P20849 MS4A6A-201ENST00000412309 1284 ntTSL 2 BASIC14.13□□□□□ -0.15
COL9A1P20849 AC090587.1-201ENST00000415809 494 ntTSL 3 BASIC14.13□□□□□ -0.15
COL9A1P20849 AC234771.1-201ENST00000416873 250 ntTSL 2 BASIC14.13□□□□□ -0.15
COL9A1P20849 RBMX2P5-201ENST00000424312 969 ntBASIC14.13□□□□□ -0.15
COL9A1P20849 FAM204CP-201ENST00000424489 642 ntBASIC14.13□□□□□ -0.15
COL9A1P20849 AC103563.1-201ENST00000429316 123 ntBASIC14.13□□□□□ -0.15
COL9A1P20849 CSTF3-203ENST00000438862 1132 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 NUCKS1P1-201ENST00000452067 703 ntBASIC14.13□□□□□ -0.15
COL9A1P20849 AC113398.1-201ENST00000464124 406 ntBASIC14.13□□□□□ -0.15
COL9A1P20849 AL136360.2-201ENST00000502636 581 ntTSL 4 BASIC14.13□□□□□ -0.15
COL9A1P20849 IGHV7-56-201ENST00000518372 351 ntBASIC14.13□□□□□ -0.15
COL9A1P20849 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC14.13□□□□□ -0.15
COL9A1P20849 AP003062.1-201ENST00000528497 762 ntTSL 3 BASIC14.13□□□□□ -0.15
COL9A1P20849 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
COL9A1P20849 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC14.13□□□□□ -0.15
COL9A1P20849 AC027682.3-201ENST00000564717 207 ntTSL 5 BASIC14.13□□□□□ -0.15
COL9A1P20849 AC009132.1-201ENST00000565194 320 ntBASIC14.13□□□□□ -0.15
COL9A1P20849 MIR22HG-206ENST00000573127 899 ntTSL 3 BASIC14.13□□□□□ -0.15
COL9A1P20849 NAA60-236ENST00000577013 575 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
COL9A1P20849 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC14.13□□□□□ -0.15
COL9A1P20849 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC14.13□□□□□ -0.15
COL9A1P20849 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 Z98949.1-213ENST00000608921 856 ntTSL 5 BASIC14.13□□□□□ -0.15
COL9A1P20849 TPT1-AS1-221ENST00000618947 520 ntTSL 3 BASIC14.13□□□□□ -0.15
COL9A1P20849 CDIPT-AS1-203ENST00000638164 713 ntBASIC14.13□□□□□ -0.15
COL9A1P20849 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC14.13□□□□□ -0.15
COL9A1P20849 AC117503.4-201ENST00000623229 1418 ntBASIC14.13□□□□□ -0.15
COL9A1P20849 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.13□□□□□ -0.15
COL9A1P20849 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC14.13□□□□□ -0.15
COL9A1P20849 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC14.13□□□□□ -0.15
COL9A1P20849 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.13□□□□□ -0.15
COL9A1P20849 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL9A1P20849 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.12□□□□□ -0.15
COL9A1P20849 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
COL9A1P20849 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 LINC00888-202ENST00000471496 1490 ntTSL 3 BASIC14.12□□□□□ -0.15
COL9A1P20849 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
COL9A1P20849 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL9A1P20849 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.12□□□□□ -0.15
COL9A1P20849 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC14.12□□□□□ -0.15
COL9A1P20849 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
COL9A1P20849 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.12□□□□□ -0.15
COL9A1P20849 OR4C5-201ENST00000319813 981 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
COL9A1P20849 TCEAL1-201ENST00000372624 1164 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 TCEAL1-202ENST00000372625 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 ACP1-203ENST00000405233 1149 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 MED20-203ENST00000409060 815 ntTSL 2 BASIC14.12□□□□□ -0.15
COL9A1P20849 AL356583.3-201ENST00000412354 417 ntBASIC14.12□□□□□ -0.15
COL9A1P20849 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC14.12□□□□□ -0.15
COL9A1P20849 AL645634.1-201ENST00000418426 462 ntTSL 3 BASIC14.12□□□□□ -0.15
COL9A1P20849 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC14.12□□□□□ -0.15
COL9A1P20849 LIAS-204ENST00000424936 1011 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 RFNG-202ENST00000429557 994 ntTSL 5 BASIC14.12□□□□□ -0.15
COL9A1P20849 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC14.12□□□□□ -0.15
COL9A1P20849 AC131097.4-201ENST00000442867 571 ntTSL 4 BASIC14.12□□□□□ -0.15
COL9A1P20849 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC14.12□□□□□ -0.15
COL9A1P20849 GXYLT1P1-201ENST00000446657 490 ntBASIC14.12□□□□□ -0.15
COL9A1P20849 AC010442.2-201ENST00000509301 407 ntBASIC14.12□□□□□ -0.15
COL9A1P20849 AC105424.1-201ENST00000514583 209 ntBASIC14.12□□□□□ -0.15
COL9A1P20849 AC068858.1-201ENST00000525114 1239 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL9A1P20849 PTS-204ENST00000525803 625 ntTSL 3 BASIC14.12□□□□□ -0.15
COL9A1P20849 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC14.12□□□□□ -0.15
COL9A1P20849 AP000439.1-201ENST00000544004 581 ntTSL 4 BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms