Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TPO-202ENST00000345913 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 RN7SL752P-201ENST00000463779 287 ntBASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 OARD1-208ENST00000469104 704 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 ALG6-202ENST00000371108 3371 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 PLOD3-201ENST00000223127 2920 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 TRIM60-201ENST00000341062 1867 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 PPP1R26P2-201ENST00000611403 3595 ntBASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 LINC02188-202ENST00000569740 3775 ntTSL 4 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 KLHL24-211ENST00000476808 2126 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 CD27-AS1-209ENST00000545339 1766 ntTSL 5 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 USB1-207ENST00000563149 1751 ntTSL 2 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 DYRK4-214ENST00000543431 2068 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 DFFB-205ENST00000378209 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CCDC28BQ9BUN5 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 OSBPL2-203ENST00000439951 3886 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 IP6K3-201ENST00000293756 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 PMS2P2-201ENST00000425039 1128 ntBASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 DPYSL2-206ENST00000523027 2130 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 CMC2-204ENST00000562713 573 ntTSL 3 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 CMC2-209ENST00000565108 399 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 YTHDF3-AS1-201ENST00000603538 718 ntBASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 AC092299.1-201ENST00000632679 757 ntBASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 SLC13A4-201ENST00000354042 2897 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 MAP7D2-202ENST00000379651 3930 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 IL19-201ENST00000270218 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 MICA-210ENST00000616296 2260 ntTSL 5 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 FAM156B-201ENST00000416841 2537 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 EPM2A-207ENST00000611340 2786 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 INHBC-201ENST00000309668 1992 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 CLIC4-201ENST00000374379 4346 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 PDZRN3-205ENST00000466780 2737 ntTSL 2 BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 IKZF1-206ENST00000359197 3487 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CCDC28BQ9BUN5 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 S1PR1-201ENST00000305352 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 POLD1-205ENST00000595904 3402 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 CHMP4C-201ENST00000297265 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 AL162391.1-201ENST00000419853 2102 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms