Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
CCDC3Q9BQI4 NLRC3-202ENST00000359128 6401 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 DDC-213ENST00000617822 1809 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 OR51A9P-201ENST00000422578 911 ntBASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 KRT18P46-201ENST00000435568 1279 ntBASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 FOXN3-AS2-201ENST00000554071 1262 ntBASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 DNM1P51-201ENST00000558149 522 ntBASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 PEBP1P2-201ENST00000603980 558 ntBASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 AL157996.1-201ENST00000624684 2299 ntBASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 USP39-207ENST00000450066 2086 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 ATP7B-202ENST00000344297 5861 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC3Q9BQI4 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 SNX18-202ENST00000343017 3140 ntBASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 GOLGA8UP-201ENST00000527159 1755 ntBASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 SYMPK-214ENST00000599814 6537 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 ZNF621-202ENST00000339296 6378 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 KRT18P37-201ENST00000520711 1282 ntBASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 THY1-209ENST00000580275 578 ntTSL 3 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 AP005212.2-201ENST00000584979 510 ntBASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 COQ4-204ENST00000608951 781 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 BAP1-211ENST00000615113 489 ntBASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC3Q9BQI4 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms