Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AGAP6-202ENST00000412531 2372 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIG3P49916 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC14.67□□□□□ -0.06
LIG3P49916 DQX1-202ENST00000404568 2689 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
LIG3P49916 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
LIG3P49916 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC14.66□□□□□ -0.06
LIG3P49916 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.66□□□□□ -0.06
LIG3P49916 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
LIG3P49916 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 ARHGEF2-206ENST00000462460 4438 ntTSL 5 BASIC14.66□□□□□ -0.06
LIG3P49916 C19orf12-208ENST00000614091 4489 ntAPPRIS P1 TSL 4 BASIC14.66□□□□□ -0.06
LIG3P49916 GNPNAT1-201ENST00000216410 3860 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 TNFRSF8-201ENST00000263932 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 CST3-203ENST00000398411 3286 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 ARMCX2-202ENST00000330154 2663 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
LIG3P49916 SLC25A17-217ENST00000544408 2060 ntTSL 2 BASIC14.66□□□□□ -0.06
LIG3P49916 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
LIG3P49916 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
LIG3P49916 VDAC1P1-201ENST00000439229 848 ntBASIC14.66□□□□□ -0.06
LIG3P49916 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC14.66□□□□□ -0.06
LIG3P49916 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC14.66□□□□□ -0.06
LIG3P49916 SCARNA21-201ENST00000517026 139 ntBASIC14.66□□□□□ -0.06
LIG3P49916 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC14.66□□□□□ -0.06
LIG3P49916 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC14.66□□□□□ -0.06
LIG3P49916 ACTG1P17-201ENST00000558391 1119 ntBASIC14.66□□□□□ -0.06
LIG3P49916 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC14.66□□□□□ -0.06
LIG3P49916 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
LIG3P49916 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 PARP10-205ENST00000525773 3404 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
LIG3P49916 CTCFL-218ENST00000608440 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
LIG3P49916 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
LIG3P49916 EDARADD-202ENST00000359362 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 F2-205ENST00000530231 1849 ntTSL 5 BASIC14.66□□□□□ -0.06
LIG3P49916 TCAF2-205ENST00000444908 2976 ntTSL 5 BASIC14.66□□□□□ -0.06
LIG3P49916 KNDC1-202ENST00000368571 3925 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
LIG3P49916 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 SLC5A8-201ENST00000536262 4178 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC14.66□□□□□ -0.06
LIG3P49916 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.66□□□□□ -0.06
LIG3P49916 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIG3P49916 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.65□□□□□ -0.06
LIG3P49916 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 GTF2F1-201ENST00000394456 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC14.65□□□□□ -0.06
LIG3P49916 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 RERE-212ENST00000476556 4598 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC14.65□□□□□ -0.06
LIG3P49916 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC14.65□□□□□ -0.06
LIG3P49916 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
LIG3P49916 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 CRCP-204ENST00000398684 492 ntTSL 2 BASIC14.65□□□□□ -0.06
LIG3P49916 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 BCYRN1-201ENST00000418539 200 ntBASIC14.65□□□□□ -0.06
LIG3P49916 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC14.65□□□□□ -0.06
LIG3P49916 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC14.65□□□□□ -0.06
LIG3P49916 OARD1-204ENST00000464633 717 ntTSL 2 BASIC14.65□□□□□ -0.06
LIG3P49916 HLA-J-204ENST00000495278 958 ntBASIC14.65□□□□□ -0.06
LIG3P49916 AC022217.1-201ENST00000521069 738 ntBASIC14.65□□□□□ -0.06
LIG3P49916 SNORD3B-2-202ENST00000571722 791 ntBASIC14.65□□□□□ -0.06
LIG3P49916 NDUFV2P1-201ENST00000596415 907 ntBASIC14.65□□□□□ -0.06
LIG3P49916 AP000346.4-201ENST00000614827 381 ntBASIC14.65□□□□□ -0.06
LIG3P49916 FAS-202ENST00000352159 1722 ntTSL 5 BASIC14.65□□□□□ -0.06
LIG3P49916 MCFD2-212ENST00000444761 4169 ntTSL 2 BASIC14.65□□□□□ -0.06
LIG3P49916 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
LIG3P49916 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
LIG3P49916 AC115284.2-201ENST00000624646 2054 ntBASIC14.65□□□□□ -0.06
LIG3P49916 AC073335.2-201ENST00000610177 3441 ntBASIC14.65□□□□□ -0.06
LIG3P49916 FZD7-201ENST00000286201 3859 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
LIG3P49916 APOBR-201ENST00000431282 3765 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
LIG3P49916 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC14.65□□□□□ -0.06
LIG3P49916 TMBIM7P-202ENST00000641474 1516 ntBASIC14.65□□□□□ -0.06
LIG3P49916 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
LIG3P49916 AC009093.10-201ENST00000641956 1442 ntBASIC14.65□□□□□ -0.06
LIG3P49916 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
LIG3P49916 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
LIG3P49916 FAM90A26-201ENST00000512047 2492 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms