Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC14.55□□□□□ -0.08
BDNFP23560 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
BDNFP23560 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
BDNFP23560 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 STK25-235ENST00000543554 2556 ntTSL 2 BASIC14.55□□□□□ -0.08
BDNFP23560 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
BDNFP23560 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC14.55□□□□□ -0.08
BDNFP23560 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC14.55□□□□□ -0.08
BDNFP23560 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
BDNFP23560 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
BDNFP23560 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
BDNFP23560 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC14.54□□□□□ -0.08
BDNFP23560 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.54□□□□□ -0.08
BDNFP23560 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
BDNFP23560 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
BDNFP23560 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 FAM90A12P-201ENST00000519497 2375 ntBASIC14.54□□□□□ -0.08
BDNFP23560 FAM90A24P-201ENST00000520792 2369 ntBASIC14.54□□□□□ -0.08
BDNFP23560 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC14.54□□□□□ -0.08
BDNFP23560 LINP1-201ENST00000417112 917 ntTSL 2 BASIC14.54□□□□□ -0.08
BDNFP23560 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC14.54□□□□□ -0.08
BDNFP23560 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC14.54□□□□□ -0.08
BDNFP23560 GULOP-201ENST00000454030 748 ntBASIC14.54□□□□□ -0.08
BDNFP23560 ALG1L6P-201ENST00000515248 758 ntBASIC14.54□□□□□ -0.08
BDNFP23560 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC14.54□□□□□ -0.08
BDNFP23560 MBP-227ENST00000526111 581 ntTSL 4 BASIC14.54□□□□□ -0.08
BDNFP23560 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC14.54□□□□□ -0.08
BDNFP23560 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC14.54□□□□□ -0.08
BDNFP23560 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 AL356740.1-201ENST00000602192 1297 ntBASIC14.54□□□□□ -0.08
BDNFP23560 AC010976.2-201ENST00000609697 852 ntBASIC14.54□□□□□ -0.08
BDNFP23560 AC011471.3-201ENST00000623576 402 ntBASIC14.54□□□□□ -0.08
BDNFP23560 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC14.54□□□□□ -0.08
BDNFP23560 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC14.54□□□□□ -0.08
BDNFP23560 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
BDNFP23560 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.54□□□□□ -0.08
BDNFP23560 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC14.54□□□□□ -0.08
BDNFP23560 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC14.54□□□□□ -0.08
BDNFP23560 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC14.54□□□□□ -0.08
BDNFP23560 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
BDNFP23560 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
BDNFP23560 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
BDNFP23560 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
BDNFP23560 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
BDNFP23560 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
BDNFP23560 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
BDNFP23560 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC14.53□□□□□ -0.08
BDNFP23560 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC14.53□□□□□ -0.08
BDNFP23560 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC14.53□□□□□ -0.08
BDNFP23560 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC14.53□□□□□ -0.08
BDNFP23560 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
BDNFP23560 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC14.53□□□□□ -0.08
BDNFP23560 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC14.53□□□□□ -0.08
BDNFP23560 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC14.53□□□□□ -0.08
BDNFP23560 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
BDNFP23560 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
BDNFP23560 AC008026.2-201ENST00000495438 348 ntBASIC14.53□□□□□ -0.08
BDNFP23560 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms