Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RN7SKP253-201ENST00000516424 309 ntBASIC14.15□□□□□ -0.14
COL9A1P20849 NEMF-210ENST00000556672 590 ntTSL 2 BASIC14.15□□□□□ -0.14
COL9A1P20849 ADAL-204ENST00000562188 1228 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
COL9A1P20849 RN7SL556P-201ENST00000582856 298 ntBASIC14.15□□□□□ -0.14
COL9A1P20849 AC015802.4-203ENST00000592622 570 ntTSL 4 BASIC14.15□□□□□ -0.14
COL9A1P20849 ADORA3-204ENST00000632535 1201 ntTSL 3 BASIC14.15□□□□□ -0.14
COL9A1P20849 FURIN-208ENST00000640725 224 ntTSL 5 BASIC14.15□□□□□ -0.14
COL9A1P20849 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
COL9A1P20849 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
COL9A1P20849 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.15□□□□□ -0.14
COL9A1P20849 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
COL9A1P20849 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 RUSC1-AS1-202ENST00000446880 1836 ntTSL 2 BASIC14.15□□□□□ -0.14
COL9A1P20849 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
COL9A1P20849 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
COL9A1P20849 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL9A1P20849 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
COL9A1P20849 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
COL9A1P20849 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
COL9A1P20849 HSPA8P5-201ENST00000456928 2069 ntBASIC14.14□□□□□ -0.15
COL9A1P20849 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 GOLGA8UP-201ENST00000527159 1755 ntBASIC14.14□□□□□ -0.15
COL9A1P20849 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
COL9A1P20849 WRB-202ENST00000380708 1464 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL9A1P20849 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.14□□□□□ -0.15
COL9A1P20849 IL4-201ENST00000231449 616 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 NDUFB11-201ENST00000276062 948 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 TPT1-201ENST00000309246 1008 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
COL9A1P20849 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL9A1P20849 NRSN1-201ENST00000378475 800 ntTSL 3 BASIC14.14□□□□□ -0.15
COL9A1P20849 CCL19-202ENST00000378800 414 ntTSL 2 BASIC14.14□□□□□ -0.15
COL9A1P20849 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
COL9A1P20849 KRT18P33-201ENST00000398525 1043 ntBASIC14.14□□□□□ -0.15
COL9A1P20849 HMGA1P1-201ENST00000415560 1062 ntBASIC14.14□□□□□ -0.15
COL9A1P20849 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC14.14□□□□□ -0.15
COL9A1P20849 MRPL45P2-201ENST00000425159 927 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC14.14□□□□□ -0.15
COL9A1P20849 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC14.14□□□□□ -0.15
COL9A1P20849 Z84721.1-201ENST00000438841 372 ntBASIC14.14□□□□□ -0.15
COL9A1P20849 IL12A-AS1-201ENST00000462431 988 ntTSL 5 BASIC14.14□□□□□ -0.15
COL9A1P20849 AC092284.1-201ENST00000511386 1289 ntBASIC14.14□□□□□ -0.15
COL9A1P20849 LINC02270-202ENST00000515691 541 ntTSL 3 BASIC14.14□□□□□ -0.15
COL9A1P20849 AC016550.3-201ENST00000515706 767 ntBASIC14.14□□□□□ -0.15
COL9A1P20849 DHRS7-202ENST00000536410 1194 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC14.14□□□□□ -0.15
COL9A1P20849 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC14.14□□□□□ -0.15
COL9A1P20849 AC010202.1-201ENST00000551181 405 ntBASIC14.14□□□□□ -0.15
COL9A1P20849 AC046168.2-202ENST00000561123 926 ntTSL 3 BASIC14.14□□□□□ -0.15
COL9A1P20849 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 OSGIN1-206ENST00000565123 833 ntTSL 2 BASIC14.14□□□□□ -0.15
COL9A1P20849 INCA1-202ENST00000574617 1260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 AC008686.1-201ENST00000586894 565 ntTSL 5 BASIC14.14□□□□□ -0.15
COL9A1P20849 AC097376.1-201ENST00000602907 997 ntBASIC14.14□□□□□ -0.15
COL9A1P20849 AC007423.1-201ENST00000605009 627 ntBASIC14.14□□□□□ -0.15
COL9A1P20849 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
COL9A1P20849 IL4-204ENST00000622422 717 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 WASH5P-206ENST00000632506 1147 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
COL9A1P20849 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL9A1P20849 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC14.14□□□□□ -0.15
COL9A1P20849 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC14.14□□□□□ -0.15
COL9A1P20849 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
COL9A1P20849 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.14□□□□□ -0.15
COL9A1P20849 DUT-208ENST00000559540 1441 ntTSL 2 BASIC14.14□□□□□ -0.15
COL9A1P20849 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL9A1P20849 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
COL9A1P20849 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL9A1P20849 CACNA2D4-209ENST00000538450 1498 ntTSL 2 BASIC14.13□□□□□ -0.15
COL9A1P20849 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms