RNA–Protein interactions for RNA: ENST00000516424.1

RN7SKP253-201, Transcript of RNA, 7SK small nuclear pseudogene 253, humanhuman

BASIC

Gene RN7SKP253, Length 309 nt, Biotype misc RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RN7SKP253-201ENST00000516424 AEBP2Q6ZN18 517 aaPredicted RBP34.41■■■■□ 3.1
RN7SKP253-201ENST00000516424 CHIC1Q5VXU3 224 aa32.77■■■□□ 2.84
RN7SKP253-201ENST00000516424 SENP3Q9H4L4 574 aaPredicted RBP29.28■■■□□ 2.28
RN7SKP253-201ENST00000516424 PHF23Q9BUL5 403 aaPredicted RBP28.94■■■□□ 2.22
RN7SKP253-201ENST00000516424 FOXD1Q16676 465 aa27.31■■□□□ 1.96
RN7SKP253-201ENST00000516424 PLPPR3Q6T4P5 718 aa26.24■■□□□ 1.79
RN7SKP253-201ENST00000516424 PPP6R1Q9UPN7 881 aa25.66■■□□□ 1.7
RN7SKP253-201ENST00000516424 ADRA2BP18089 450 aa25.59■■□□□ 1.69
RN7SKP253-201ENST00000516424 PIAS4Q8N2W9 510 aaPredicted RBP25.55■■□□□ 1.68
RN7SKP253-201ENST00000516424 MSH5O43196 834 aa25.45■■□□□ 1.66
RN7SKP253-201ENST00000516424 POTEDQ86YR6 584 aa24.65■■□□□ 1.54
RN7SKP253-201ENST00000516424 MAPK8IP2Q13387 824 aaPredicted RBP23.47■■□□□ 1.35
RN7SKP253-201ENST00000516424 SCAF1Q9H7N4 1312 aaKnown RBP23.33■■□□□ 1.33
RN7SKP253-201ENST00000516424 DMRT2Q9Y5R5 561 aa23.25■■□□□ 1.31
RN7SKP253-201ENST00000516424 PPP4R3CPQ6ZMV5 832 aa23.03■■□□□ 1.28
RN7SKP253-201ENST00000516424 CNKSR2Q8WXI2 1034 aa22.55■■□□□ 1.2
RN7SKP253-201ENST00000516424 HOXD11P31277 338 aaPredicted RBP22.44■■□□□ 1.18
RN7SKP253-201ENST00000516424 DCAF8L1A6NGE4 600 aa22.31■■□□□ 1.16
RN7SKP253-201ENST00000516424 RNF216Q9NWF9 866 aaPredicted RBP22.31■■□□□ 1.16
RN7SKP253-201ENST00000516424 NCBP3Q53F19 620 aaKnown RBP22.15■■□□□ 1.14
RN7SKP253-201ENST00000516424 NPM3O75607 178 aaKnown RBP21.88■■□□□ 1.09
RN7SKP253-201ENST00000516424 CACNB1Q02641 598 aaPredicted RBP21.78■■□□□ 1.08
RN7SKP253-201ENST00000516424 RNF39Q9H2S5 420 aa21.77■■□□□ 1.08
RN7SKP253-201ENST00000516424 KCNA4P22459 653 aa21.62■■□□□ 1.05
RN7SKP253-201ENST00000516424 DNAJC5BQ9UF47 199 aa21.59■■□□□ 1.05
RN7SKP253-201ENST00000516424 C1QBPQ07021 282 aaKnown RBP21.42■■□□□ 1.02
RN7SKP253-201ENST00000516424 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.39■■□□□ 1.01
RN7SKP253-201ENST00000516424 U3KPZ7 1027 aaPredicted RBP20.98■□□□□ 0.95
RN7SKP253-201ENST00000516424 SLC4A2P04920 1241 aa20.88■□□□□ 0.93
RN7SKP253-201ENST00000516424 SPINK5Q9NQ38 1064 aaPredicted RBP20.65■□□□□ 0.9
RN7SKP253-201ENST00000516424 CAPN15O75808 1086 aa20.58■□□□□ 0.89
RN7SKP253-201ENST00000516424 DSG3P32926 999 aa20.43■□□□□ 0.86
RN7SKP253-201ENST00000516424 SLC4A1APQ9BWU0 796 aaKnown RBP20.41■□□□□ 0.86
RN7SKP253-201ENST00000516424 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.37■□□□□ 0.85
RN7SKP253-201ENST00000516424 HNRNPUL2Q1KMD3 747 aaKnown RBP20.37■□□□□ 0.85
RN7SKP253-201ENST00000516424 APLP2Q06481 763 aa20.33■□□□□ 0.85
RN7SKP253-201ENST00000516424 TRHP20396 242 aaPredicted RBP20.3■□□□□ 0.84
RN7SKP253-201ENST00000516424 SAMD1Q6SPF0 538 aaPredicted RBP20.28■□□□□ 0.84
RN7SKP253-201ENST00000516424 ZNF219Q9P2Y4 722 aaPredicted RBP20.23■□□□□ 0.83
RN7SKP253-201ENST00000516424 MYCNP04198 464 aaPredicted RBP20.21■□□□□ 0.83
RN7SKP253-201ENST00000516424 ABCB7O75027 752 aa20.15■□□□□ 0.82
RN7SKP253-201ENST00000516424 FOXD4L1Q9NU39 408 aa20.08■□□□□ 0.81
RN7SKP253-201ENST00000516424 ZBTB22O15209 634 aa19.9■□□□□ 0.78
RN7SKP253-201ENST00000516424 ATF5Q9Y2D1 282 aaPredicted RBP19.8■□□□□ 0.76
RN7SKP253-201ENST00000516424 POLA2Q14181 598 aa19.78■□□□□ 0.76
RN7SKP253-201ENST00000516424 RBM42Q9BTD8 480 aaKnown RBP19.45■□□□□ 0.7
RN7SKP253-201ENST00000516424 ATXN8OSP0DMR3 200 aa19.43■□□□□ 0.7
RN7SKP253-201ENST00000516424 POTEHQ6S545 545 aa19.34■□□□□ 0.69
RN7SKP253-201ENST00000516424 ZBTB12Q9Y330 459 aaPredicted RBP19.34■□□□□ 0.69
RN7SKP253-201ENST00000516424 OSCARQ8IYS5 282 aa19.17■□□□□ 0.66
RN7SKP253-201ENST00000516424 CSRNP3Q8WYN3 585 aa19.07■□□□□ 0.64
RN7SKP253-201ENST00000516424 AKT1S1Q96B36 256 aa19.04■□□□□ 0.64
RN7SKP253-201ENST00000516424 CHRDL2Q6WN34 429 aa19.01■□□□□ 0.63
RN7SKP253-201ENST00000516424 FBLN2P98095 1184 aa18.95■□□□□ 0.62
RN7SKP253-201ENST00000516424 EHMT2Q96KQ7 1210 aa18.93■□□□□ 0.62
RN7SKP253-201ENST00000516424 REM2Q8IYK8 340 aaPredicted RBP18.89■□□□□ 0.61
RN7SKP253-201ENST00000516424 MKRN4PQ13434 485 aaPredicted RBP18.88■□□□□ 0.61
RN7SKP253-201ENST00000516424 SPDYE2BA6NHP3 402 aa18.77■□□□□ 0.6
RN7SKP253-201ENST00000516424 SPDYE6P0CI01 402 aa18.77■□□□□ 0.6
RN7SKP253-201ENST00000516424 SPDYE2Q495Y8 402 aa18.77■□□□□ 0.6
RN7SKP253-201ENST00000516424 PITPNM1O00562 1244 aa18.71■□□□□ 0.59
RN7SKP253-201ENST00000516424 PIP4P2Q8N4L2 257 aa18.59■□□□□ 0.57
RN7SKP253-201ENST00000516424 ZNF692Q9BU19 519 aaPredicted RBP18.59■□□□□ 0.57
RN7SKP253-201ENST00000516424 SSUH2Q9Y2M2 353 aa18.56■□□□□ 0.56
RN7SKP253-201ENST00000516424 FXR2P51116 673 aaKnown RBP eCLIP18.49■□□□□ 0.55
RN7SKP253-201ENST00000516424 SPDYE1Q8NFV5 336 aaPredicted RBP18.41■□□□□ 0.54
RN7SKP253-201ENST00000516424 CLEC11AQ9Y240 323 aa18.41■□□□□ 0.54
RN7SKP253-201ENST00000516424 PABPN1Q86U42 306 aaKnown RBP eCLIP18.33■□□□□ 0.52
RN7SKP253-201ENST00000516424 HAX1O00165 279 aa18.21■□□□□ 0.51
RN7SKP253-201ENST00000516424 PRKAR2AP13861 404 aaKnown RBP18.21■□□□□ 0.51
RN7SKP253-201ENST00000516424 SP7Q8TDD2 431 aaPredicted RBP18.19■□□□□ 0.5
RN7SKP253-201ENST00000516424 PRR29P0C7W0 189 aa18.1■□□□□ 0.49
RN7SKP253-201ENST00000516424 CHADLQ6NUI6 762 aa18.06■□□□□ 0.48
RN7SKP253-201ENST00000516424 EVX2Q03828 476 aa18.04■□□□□ 0.48
RN7SKP253-201ENST00000516424 SPDYE4A6NLX3 237 aa18.03■□□□□ 0.48
RN7SKP253-201ENST00000516424 C19orf67A6NJJ6 358 aa17.89■□□□□ 0.45
RN7SKP253-201ENST00000516424 STAG3Q9UJ98 1225 aa17.81■□□□□ 0.44
RN7SKP253-201ENST00000516424 FARP1Q9Y4F1 1045 aaPredicted RBP17.78■□□□□ 0.44
RN7SKP253-201ENST00000516424 CREBZFQ9NS37 354 aa17.71■□□□□ 0.43
RN7SKP253-201ENST00000516424 CD44P16070 742 aaKnown RBP17.64■□□□□ 0.41
RN7SKP253-201ENST00000516424 PROM2Q8N271 834 aa17.62■□□□□ 0.41
RN7SKP253-201ENST00000516424 GABBR2O75899 941 aa17.6■□□□□ 0.41
RN7SKP253-201ENST00000516424 MNX1P50219 401 aaPredicted RBP17.43■□□□□ 0.38
RN7SKP253-201ENST00000516424 ZRANB1Q9UGI0 708 aa17.41■□□□□ 0.38
RN7SKP253-201ENST00000516424 ZNF579Q8NAF0 562 aaKnown RBP17.37■□□□□ 0.37
RN7SKP253-201ENST00000516424 NPM1P06748 294 aaKnown RBP eCLIP17.34■□□□□ 0.37
RN7SKP253-201ENST00000516424 CLCN6P51797 869 aa17.3■□□□□ 0.36
RN7SKP253-201ENST00000516424 FKBP8Q14318 412 aa17.29■□□□□ 0.36
RN7SKP253-201ENST00000516424 PAK3O75914 559 aaPredicted RBP17.27■□□□□ 0.36
RN7SKP253-201ENST00000516424 POTEIP0CG38 1075 aa17.25■□□□□ 0.35
RN7SKP253-201ENST00000516424 PHF12Q96QT6 1004 aa17.21■□□□□ 0.35
RN7SKP253-201ENST00000516424 MIER1Q8N108 512 aa17.19■□□□□ 0.34
RN7SKP253-201ENST00000516424 GALR2O43603 387 aaPredicted RBP17.18■□□□□ 0.34
RN7SKP253-201ENST00000516424 DCBLD2Q96PD2 775 aa17.15■□□□□ 0.34
RN7SKP253-201ENST00000516424 PLEKHG5O94827 1062 aa17.11■□□□□ 0.33
RN7SKP253-201ENST00000516424 TSPYL2Q9H2G4 693 aaPredicted RBP17.08■□□□□ 0.32
RN7SKP253-201ENST00000516424 LHX8Q68G74 356 aa17.06■□□□□ 0.32
RN7SKP253-201ENST00000516424 PLCD3Q8N3E9 789 aa17.06■□□□□ 0.32
RN7SKP253-201ENST00000516424 CCDC61Q9Y6R9 512 aa16.99■□□□□ 0.31
RN7SKP253-201ENST00000516424 RASEFQ8IZ41 740 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms