Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC12.75□□□□□ -0.37
RFC3P40938 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC12.75□□□□□ -0.37
RFC3P40938 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC12.75□□□□□ -0.37
RFC3P40938 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
RFC3P40938 RPL3P2-204ENST00000413027 1203 ntBASIC12.75□□□□□ -0.37
RFC3P40938 OR52M2P-201ENST00000414298 959 ntBASIC12.75□□□□□ -0.37
RFC3P40938 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC12.75□□□□□ -0.37
RFC3P40938 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC12.75□□□□□ -0.37
RFC3P40938 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 PPP1R2P4-201ENST00000424051 595 ntBASIC12.75□□□□□ -0.37
RFC3P40938 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC12.75□□□□□ -0.37
RFC3P40938 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC12.75□□□□□ -0.37
RFC3P40938 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC12.75□□□□□ -0.37
RFC3P40938 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
RFC3P40938 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC12.75□□□□□ -0.37
RFC3P40938 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
RFC3P40938 LINC00634-202ENST00000505157 222 ntBASIC12.75□□□□□ -0.37
RFC3P40938 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC12.75□□□□□ -0.37
RFC3P40938 VENTXP3-201ENST00000546480 773 ntBASIC12.75□□□□□ -0.37
RFC3P40938 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC12.75□□□□□ -0.37
RFC3P40938 DUT-208ENST00000559540 1441 ntTSL 2 BASIC12.75□□□□□ -0.37
RFC3P40938 AC138761.6-201ENST00000583997 1423 ntBASIC12.75□□□□□ -0.37
RFC3P40938 AC015909.5-201ENST00000624336 2266 ntBASIC12.75□□□□□ -0.37
RFC3P40938 AL157996.1-201ENST00000624684 2299 ntBASIC12.75□□□□□ -0.37
RFC3P40938 LINC00431-202ENST00000636375 159 ntBASIC12.75□□□□□ -0.37
RFC3P40938 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC12.75□□□□□ -0.37
RFC3P40938 MEX3B-202ENST00000558133 4333 ntBASIC12.75□□□□□ -0.37
RFC3P40938 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
RFC3P40938 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
RFC3P40938 AC105206.1-202ENST00000314927 2368 ntBASIC12.74□□□□□ -0.37
RFC3P40938 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
RFC3P40938 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC12.74□□□□□ -0.37
RFC3P40938 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
RFC3P40938 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
RFC3P40938 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC12.74□□□□□ -0.37
RFC3P40938 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC12.74□□□□□ -0.37
RFC3P40938 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
RFC3P40938 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
RFC3P40938 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RFC3P40938 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
RFC3P40938 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC12.74□□□□□ -0.37
RFC3P40938 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC12.74□□□□□ -0.37
RFC3P40938 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
RFC3P40938 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
RFC3P40938 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC12.74□□□□□ -0.37
RFC3P40938 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RFC3P40938 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC12.74□□□□□ -0.37
RFC3P40938 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RFC3P40938 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
RFC3P40938 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC12.74□□□□□ -0.37
RFC3P40938 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC12.74□□□□□ -0.37
RFC3P40938 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RFC3P40938 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
RFC3P40938 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RFC3P40938 AL357563.1-201ENST00000404728 395 ntBASIC12.74□□□□□ -0.37
RFC3P40938 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC12.74□□□□□ -0.37
RFC3P40938 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
RFC3P40938 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC12.74□□□□□ -0.37
RFC3P40938 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RFC3P40938 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
RFC3P40938 AC092573.1-201ENST00000433054 884 ntBASIC12.74□□□□□ -0.37
RFC3P40938 AC114501.1-201ENST00000445949 172 ntBASIC12.74□□□□□ -0.37
RFC3P40938 KRT18P15-201ENST00000458108 1291 ntBASIC12.74□□□□□ -0.37
RFC3P40938 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC12.74□□□□□ -0.37
RFC3P40938 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
RFC3P40938 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC12.74□□□□□ -0.37
RFC3P40938 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC12.74□□□□□ -0.37
RFC3P40938 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC12.74□□□□□ -0.37
RFC3P40938 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC12.74□□□□□ -0.37
RFC3P40938 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC12.74□□□□□ -0.37
RFC3P40938 AL359091.4-201ENST00000610052 409 ntBASIC12.74□□□□□ -0.37
RFC3P40938 AC002044.2-201ENST00000624910 970 ntBASIC12.74□□□□□ -0.37
RFC3P40938 AC127024.7-201ENST00000625101 200 ntBASIC12.74□□□□□ -0.37
RFC3P40938 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC12.74□□□□□ -0.37
RFC3P40938 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms