Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 AL137784.3-201ENST00000623858 2288 ntBASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 CELP-201ENST00000411440 1249 ntTSL 5 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 RPL17P11-201ENST00000417593 544 ntBASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 GRPEL2P1-201ENST00000453145 339 ntBASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 RN7SL564P-201ENST00000496309 250 ntBASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 AC007952.4-201ENST00000573866 637 ntBASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 AC132825.4-202ENST00000578792 434 ntBASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 MIR4265-201ENST00000582152 99 ntBASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 MIR4649-201ENST00000582839 64 ntBASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 AC005041.3-201ENST00000606287 649 ntBASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 AC007250.1-201ENST00000608934 338 ntBASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 AP003419.4-201ENST00000616071 517 ntBASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 AL161773.1-201ENST00000624845 863 ntBASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 F2-205ENST00000530231 1849 ntTSL 5 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 RN7SL767P-201ENST00000493013 295 ntBASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 CR383656.3-201ENST00000551315 183 ntBASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 AP005264.5-201ENST00000590066 467 ntBASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 HPX-213ENST00000615166 826 ntTSL 5 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 AC020917.4-201ENST00000623994 1999 ntBASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC15.49■□□□□ 0.07
COL4A3BPQ9Y5P4 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms