Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM47Q96LD4 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM47Q96LD4 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
TRIM47Q96LD4 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM47Q96LD4 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM47Q96LD4 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM47Q96LD4 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
TRIM47Q96LD4 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
TRIM47Q96LD4 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TRIM47Q96LD4 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC16.22■□□□□ 0.19
TRIM47Q96LD4 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM47Q96LD4 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC16.22■□□□□ 0.19
TRIM47Q96LD4 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM47Q96LD4 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 AC138969.2-201ENST00000532739 9932 ntBASIC16.21■□□□□ 0.19
TRIM47Q96LD4 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 GEMIN8P4-201ENST00000380526 729 ntBASIC16.21■□□□□ 0.19
TRIM47Q96LD4 BX679664.3-201ENST00000414070 555 ntBASIC16.21■□□□□ 0.19
TRIM47Q96LD4 KRT18P4-201ENST00000422599 1288 ntBASIC16.21■□□□□ 0.19
TRIM47Q96LD4 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 GALP-202ENST00000440823 889 ntTSL 5 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 AC113935.1-201ENST00000471722 555 ntBASIC16.21■□□□□ 0.19
TRIM47Q96LD4 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 IGHEP2-201ENST00000519308 1256 ntBASIC16.21■□□□□ 0.19
TRIM47Q96LD4 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 F11R-204ENST00000537746 1245 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 KNOP1P1-201ENST00000542108 989 ntBASIC16.21■□□□□ 0.19
TRIM47Q96LD4 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 AL009176.1-201ENST00000607876 650 ntBASIC16.21■□□□□ 0.19
TRIM47Q96LD4 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TRIM47Q96LD4 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM47Q96LD4 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
TRIM47Q96LD4 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM47Q96LD4 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM47Q96LD4 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM47Q96LD4 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM47Q96LD4 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM47Q96LD4 POLL-206ENST00000370172 2308 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 AL031595.1-201ENST00000623969 4709 ntBASIC16.2■□□□□ 0.18
TRIM47Q96LD4 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 KRT8P18-201ENST00000413425 1445 ntBASIC16.2■□□□□ 0.18
TRIM47Q96LD4 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 AL365181.1-201ENST00000564032 1828 ntBASIC16.2■□□□□ 0.18
TRIM47Q96LD4 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 PIFO-201ENST00000369737 746 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 RN7SKP155-201ENST00000516031 288 ntBASIC16.2■□□□□ 0.18
TRIM47Q96LD4 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 AL590235.1-201ENST00000564650 861 ntBASIC16.2■□□□□ 0.18
TRIM47Q96LD4 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC16.2■□□□□ 0.18
TRIM47Q96LD4 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms