Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC11.67□□□□□ -0.54
CD74P04233 C2orf69P2-201ENST00000562032 1123 ntBASIC11.67□□□□□ -0.54
CD74P04233 PPY2P-201ENST00000582808 702 ntBASIC11.67□□□□□ -0.54
CD74P04233 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC11.67□□□□□ -0.54
CD74P04233 AC009884.2-201ENST00000603110 324 ntBASIC11.67□□□□□ -0.54
CD74P04233 AL354718.3-201ENST00000616414 581 ntBASIC11.67□□□□□ -0.54
CD74P04233 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 CR382287.1-201ENST00000623954 586 ntBASIC11.67□□□□□ -0.54
CD74P04233 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 SYTL4-201ENST00000263033 2335 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
CD74P04233 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC11.67□□□□□ -0.54
CD74P04233 IFT122-204ENST00000349441 3569 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 MAX-212ENST00000555932 1673 ntTSL 5 BASIC11.67□□□□□ -0.54
CD74P04233 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 GLP1R-201ENST00000373256 3105 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 PERM1-202ENST00000433179 3340 ntAPPRIS P2 TSL 5 BASIC11.67□□□□□ -0.54
CD74P04233 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC11.67□□□□□ -0.54
CD74P04233 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 SPINT1-201ENST00000344051 3056 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 SLC4A11-207ENST00000539553 2832 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
CD74P04233 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 MATN2-211ENST00000521689 3554 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 AL449403.1-201ENST00000432783 1577 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CD74P04233 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 TRMT1-202ENST00000357720 2142 ntAPPRIS P3 TSL 2 BASIC11.66□□□□□ -0.54
CD74P04233 EPS8L3-201ENST00000361852 2130 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 RMND5B-212ENST00000542098 1681 ntTSL 5 BASIC11.66□□□□□ -0.54
CD74P04233 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC11.66□□□□□ -0.54
CD74P04233 SH2D7-201ENST00000328828 2750 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
CD74P04233 EPM2A-207ENST00000611340 2786 ntTSL 2 BASIC11.66□□□□□ -0.54
CD74P04233 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
CD74P04233 STRCP1-201ENST00000509801 5328 ntBASIC11.66□□□□□ -0.54
CD74P04233 SON-203ENST00000381679 7860 ntTSL 5 BASIC11.66□□□□□ -0.54
CD74P04233 ARMCX6-201ENST00000361910 1846 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC11.66□□□□□ -0.54
CD74P04233 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC11.66□□□□□ -0.54
CD74P04233 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC11.66□□□□□ -0.54
CD74P04233 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC11.66□□□□□ -0.54
CD74P04233 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC11.66□□□□□ -0.54
CD74P04233 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC11.66□□□□□ -0.54
CD74P04233 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC11.66□□□□□ -0.54
CD74P04233 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC11.66□□□□□ -0.54
CD74P04233 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC11.66□□□□□ -0.54
CD74P04233 AC008687.7-203ENST00000598442 551 ntTSL 4 BASIC11.66□□□□□ -0.54
CD74P04233 AC093512.1-201ENST00000617969 520 ntBASIC11.66□□□□□ -0.54
CD74P04233 FOXN3-201ENST00000261302 2542 ntAPPRIS ALT1 TSL 5 BASIC11.66□□□□□ -0.54
CD74P04233 MFSD11-201ENST00000336509 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
CD74P04233 MME-204ENST00000462745 3590 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
CD74P04233 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
CD74P04233 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC11.66□□□□□ -0.54
CD74P04233 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC11.66□□□□□ -0.54
CD74P04233 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC11.66□□□□□ -0.54
CD74P04233 CPLX4-202ENST00000587244 1916 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 LINC01649-202ENST00000634255 1743 ntTSL 5 BASIC11.66□□□□□ -0.54
CD74P04233 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 NOA1-201ENST00000264230 3415 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CD74P04233 CACNB1-202ENST00000394303 3742 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
CD74P04233 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CD74P04233 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CD74P04233 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC11.65□□□□□ -0.54
CD74P04233 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CD74P04233 AC009549.1-201ENST00000603468 1686 ntBASIC11.65□□□□□ -0.54
CD74P04233 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CD74P04233 MLPH-202ENST00000338530 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
CD74P04233 BEST1-208ENST00000534553 1829 ntTSL 2 BASIC11.65□□□□□ -0.54
CD74P04233 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CD74P04233 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CD74P04233 TJAP1-202ENST00000372444 2778 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
CD74P04233 TJAP1-203ENST00000372445 2751 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CD74P04233 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
CD74P04233 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
CD74P04233 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
CD74P04233 MCF2L-213ENST00000421756 3560 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CD74P04233 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CD74P04233 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC11.65□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms