RNA–Protein interactions for RNA: ENST00000421756.5

MCF2L-213, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best) BASIC

Gene MCF2L, Length 3,560 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-213ENST00000421756 NISCHQ9Y2I1 1504 aa26.95■■□□□ 1.9
MCF2L-213ENST00000421756 SHROOM4Q9ULL8 1493 aa24.13■■□□□ 1.45
MCF2L-213ENST00000421756 DCAF8L2P0C7V8 631 aa23.92■■□□□ 1.42
MCF2L-213ENST00000421756 SUPT5HO00267 1087 aaKnown RBP23.69■■□□□ 1.38
MCF2L-213ENST00000421756 ZCCHC6Q5VYS8 1495 aaKnown RBP22.64■■□□□ 1.22
MCF2L-213ENST00000421756 CHIC1Q5VXU3 224 aa22.43■■□□□ 1.18
MCF2L-213ENST00000421756 CCDC180Q9P1Z9 1646 aa22.38■■□□□ 1.17
MCF2L-213ENST00000421756 EHMT2Q96KQ7 1210 aa22.35■■□□□ 1.17
MCF2L-213ENST00000421756 LOC105371045A0A1W2PR82 267 aa22.22■■□□□ 1.15
MCF2L-213ENST00000421756 MYO15BQ96JP2 1530 aa22.19■■□□□ 1.14
MCF2L-213ENST00000421756 PCGF6Q9BYE7 350 aa22.13■■□□□ 1.13
MCF2L-213ENST00000421756 FAM9AQ8IZU1 332 aaPredicted RBP22.09■■□□□ 1.13
MCF2L-213ENST00000421756 ABCC9O60706 1549 aa22■■□□□ 1.11
MCF2L-213ENST00000421756 SCRIBQ14160 1630 aa21.84■■□□□ 1.09
MCF2L-213ENST00000421756 TRIM41Q8WV44 630 aa21.74■■□□□ 1.07
MCF2L-213ENST00000421756 PPARGC1BQ86YN6 1023 aaKnown RBP21.72■■□□□ 1.07
MCF2L-213ENST00000421756 HRCP23327 699 aa21.56■■□□□ 1.04
MCF2L-213ENST00000421756 DCAF1Q9Y4B6 1507 aa21.56■■□□□ 1.04
MCF2L-213ENST00000421756 RSF1Q96T23 1441 aaPredicted RBP21.52■■□□□ 1.04
MCF2L-213ENST00000421756 TTBK1Q5TCY1 1321 aaPredicted RBP21.5■■□□□ 1.03
MCF2L-213ENST00000421756 CECR2Q9BXF3 1484 aa21.43■■□□□ 1.02
MCF2L-213ENST00000421756 PABPN1Q86U42 306 aaKnown RBP eCLIP21.42■■□□□ 1.022e-6■■■□□ 18.6
MCF2L-213ENST00000421756 RB1CC1Q8TDY2 1594 aa21.29■■□□□ 1
MCF2L-213ENST00000421756 TRIM26Q12899 539 aaPredicted RBP21.22■□□□□ 0.99
MCF2L-213ENST00000421756 MROH2BQ7Z745 1585 aa21.17■□□□□ 0.98
MCF2L-213ENST00000421756 RANGAP1P46060 587 aaPredicted RBP21.1■□□□□ 0.97
MCF2L-213ENST00000421756 WIZO95785 1651 aa21.02■□□□□ 0.96
MCF2L-213ENST00000421756 NACADO15069 1562 aa21■□□□□ 0.95
MCF2L-213ENST00000421756 UBTFP17480 764 aaKnown RBP20.91■□□□□ 0.94
MCF2L-213ENST00000421756 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.89■□□□□ 0.93
MCF2L-213ENST00000421756 ABCC8Q09428 1581 aa20.77■□□□□ 0.92
MCF2L-213ENST00000421756 CCER1Q8TC90 406 aaPredicted RBP20.74■□□□□ 0.91
MCF2L-213ENST00000421756 CCDC88BA6NC98 1476 aa20.67■□□□□ 0.9
MCF2L-213ENST00000421756 BAZ1AQ9NRL2 1556 aaPredicted RBP20.64■□□□□ 0.9
MCF2L-213ENST00000421756 SOGA1O94964 1423 aa20.64■□□□□ 0.9
MCF2L-213ENST00000421756 CSRNP3Q8WYN3 585 aa20.56■□□□□ 0.88
MCF2L-213ENST00000421756 RUSC2Q8N2Y8 1516 aa20.56■□□□□ 0.88
MCF2L-213ENST00000421756 HNRNPUL2Q1KMD3 747 aaKnown RBP20.52■□□□□ 0.88
MCF2L-213ENST00000421756 ZEB1P37275 1124 aaPredicted RBP20.51■□□□□ 0.87
MCF2L-213ENST00000421756 SMARCA4P51532 1647 aa20.47■□□□□ 0.87
MCF2L-213ENST00000421756 TOP2AP11388 1531 aaKnown RBP20.41■□□□□ 0.86
MCF2L-213ENST00000421756 CEP162Q5TB80 1403 aa20.38■□□□□ 0.85
MCF2L-213ENST00000421756 SMARCA2P51531 1590 aa20.38■□□□□ 0.85
MCF2L-213ENST00000421756 UNC13AQ9UPW8 1703 aa20.35■□□□□ 0.85
MCF2L-213ENST00000421756 APLP2Q06481 763 aa20.35■□□□□ 0.85
MCF2L-213ENST00000421756 WRNQ14191 1432 aaPredicted RBP eCLIP20.31■□□□□ 0.84
MCF2L-213ENST00000421756 BICRAQ9NZM4 1560 aa20.24■□□□□ 0.83
MCF2L-213ENST00000421756 ITGAEP38570 1179 aa20.23■□□□□ 0.83
MCF2L-213ENST00000421756 BAZ1BQ9UIG0 1483 aaKnown RBP20.21■□□□□ 0.83
MCF2L-213ENST00000421756 YTHDC1Q96MU7 727 aaKnown RBP20.18■□□□□ 0.82
MCF2L-213ENST00000421756 ATP1B4Q9UN42 357 aaPredicted RBP20.17■□□□□ 0.82
MCF2L-213ENST00000421756 TNIKQ9UKE5 1360 aa20.16■□□□□ 0.82
MCF2L-213ENST00000421756 ATAD2BQ9ULI0 1458 aa20.15■□□□□ 0.82
MCF2L-213ENST00000421756 EIF4G1Q04637 1599 aaKnown RBP20.15■□□□□ 0.82
MCF2L-213ENST00000421756 DIEXFQ68CQ4 756 aaKnown RBP20.12■□□□□ 0.81
MCF2L-213ENST00000421756 GOLGA3Q08378 1498 aa20.07■□□□□ 0.8
MCF2L-213ENST00000421756 CLIP1P30622 1438 aa20.07■□□□□ 0.8
MCF2L-213ENST00000421756 P3H3Q8IVL6 736 aa20.05■□□□□ 0.8
MCF2L-213ENST00000421756 SYNJ1O43426 1573 aa20.04■□□□□ 0.8
MCF2L-213ENST00000421756 RAPGEF2Q9Y4G8 1499 aa20.03■□□□□ 0.8
MCF2L-213ENST00000421756 SCAF1Q9H7N4 1312 aaKnown RBP20.01■□□□□ 0.79
MCF2L-213ENST00000421756 KANK4Q5T7N3 995 aaPredicted RBP19.94■□□□□ 0.78
MCF2L-213ENST00000421756 EEA1Q15075 1411 aa19.93■□□□□ 0.78
MCF2L-213ENST00000421756 NEUROD1Q13562 356 aa19.92■□□□□ 0.78
MCF2L-213ENST00000421756 CEP164Q9UPV0 1460 aa19.92■□□□□ 0.78
MCF2L-213ENST00000421756 ZNF316A6NFI3 1004 aaPredicted RBP19.83■□□□□ 0.76
MCF2L-213ENST00000421756 GTF3C3Q9Y5Q9 886 aa19.78■□□□□ 0.76
MCF2L-213ENST00000421756 VPS8Q8N3P4 1428 aa19.76■□□□□ 0.75
MCF2L-213ENST00000421756 MIER1Q8N108 512 aa19.75■□□□□ 0.75
MCF2L-213ENST00000421756 FAM50AQ14320 339 aaKnown RBP19.74■□□□□ 0.75
MCF2L-213ENST00000421756 ACIN1Q9UKV3 1341 aaKnown RBP19.73■□□□□ 0.75
MCF2L-213ENST00000421756 ARID3CA6NKF2 412 aa19.7■□□□□ 0.74
MCF2L-213ENST00000421756 CENPBP07199 599 aaPredicted RBP19.7■□□□□ 0.74
MCF2L-213ENST00000421756 DNAJC5BQ9UF47 199 aa19.7■□□□□ 0.74
MCF2L-213ENST00000421756 PEG3Q9GZU2 1588 aa19.7■□□□□ 0.74
MCF2L-213ENST00000421756 KIF27Q86VH2 1401 aa19.66■□□□□ 0.74
MCF2L-213ENST00000421756 CUX2O14529 1486 aa19.65■□□□□ 0.74
MCF2L-213ENST00000421756 KIF21BO75037 1637 aa19.65■□□□□ 0.74
MCF2L-213ENST00000421756 CUX1P39880 1505 aa19.63■□□□□ 0.73
MCF2L-213ENST00000421756 NCAPD3P42695 1498 aa19.6■□□□□ 0.73
MCF2L-213ENST00000421756 HIRIP3Q9BW71 556 aaPredicted RBP19.58■□□□□ 0.73
MCF2L-213ENST00000421756 ARAP1Q96P48 1450 aa19.58■□□□□ 0.73
MCF2L-213ENST00000421756 TOP2BQ02880 1626 aa19.57■□□□□ 0.72
MCF2L-213ENST00000421756 CARMIL1Q5VZK9 1371 aa19.52■□□□□ 0.72
MCF2L-213ENST00000421756 IGF1RP08069 1367 aa19.51■□□□□ 0.71
MCF2L-213ENST00000421756 CADPSQ9ULU8 1353 aa19.51■□□□□ 0.71
MCF2L-213ENST00000421756 PRXQ9BXM0 1461 aa19.5■□□□□ 0.71
MCF2L-213ENST00000421756 SIN3AQ96ST3 1273 aa19.49■□□□□ 0.71
MCF2L-213ENST00000421756 CFTRP13569 1480 aa19.49■□□□□ 0.71
MCF2L-213ENST00000421756 NESP48681 1621 aa19.48■□□□□ 0.71
MCF2L-213ENST00000421756 RAD54L2Q9Y4B4 1467 aa19.47■□□□□ 0.71
MCF2L-213ENST00000421756 TDRD9Q8NDG6 1382 aaKnown RBP19.43■□□□□ 0.7
MCF2L-213ENST00000421756 FGD5Q6ZNL6 1462 aa19.43■□□□□ 0.7
MCF2L-213ENST00000421756 ARHGAP35Q9NRY4 1499 aa19.41■□□□□ 0.7
MCF2L-213ENST00000421756 DHX57Q6P158 1386 aaKnown RBP19.41■□□□□ 0.7
MCF2L-213ENST00000421756 CCNB3Q8WWL7 1395 aa19.41■□□□□ 0.7
MCF2L-213ENST00000421756 FHOD3Q2V2M9 1422 aa19.38■□□□□ 0.69
MCF2L-213ENST00000421756 HMGXB3Q12766 1538 aa19.37■□□□□ 0.69
MCF2L-213ENST00000421756 CHIC2Q9UKJ5 165 aa19.35■□□□□ 0.69
MCF2L-213ENST00000421756 FANCD2Q9BXW9 1451 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms