Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 DCAF5-209ENST00000557386 2883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 DRG2-202ENST00000395726 1897 ntTSL 5 BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 ALG6-202ENST00000371108 3371 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 PI4KAP2-201ENST00000360806 2080 ntBASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 AL445209.1-201ENST00000607269 3491 ntBASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 BEND3P3-201ENST00000611030 2440 ntBASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 OR52M2P-201ENST00000414298 959 ntBASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 AC136604.1-202ENST00000425471 771 ntBASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 AC012362.1-201ENST00000434906 739 ntBASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 COQ10BP2-201ENST00000513804 724 ntBASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 AP002803.1-201ENST00000528836 498 ntBASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 TPM1-223ENST00000560445 485 ntTSL 3 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 GALC-206ENST00000544807 2528 ntTSL 2 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 CEP112-202ENST00000392769 3517 ntAPPRIS P4 TSL 5 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 C12orf66-201ENST00000311915 2698 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 RHPN1-AS1-201ENST00000518049 1918 ntBASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 DDC-212ENST00000615193 1674 ntTSL 3 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 HLA-DMA-203ENST00000395305 777 ntBASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 AC005077.3-201ENST00000449614 213 ntBASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 RNA5SP417-201ENST00000516459 108 ntBASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC14.09□□□□□ -0.15
SHROOM3Q8TF72 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
SHROOM3Q8TF72 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SHROOM3Q8TF72 AC009474.1-201ENST00000455096 1565 ntBASIC14.08□□□□□ -0.15
SHROOM3Q8TF72 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.08□□□□□ -0.15
SHROOM3Q8TF72 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC14.08□□□□□ -0.15
SHROOM3Q8TF72 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SHROOM3Q8TF72 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
SHROOM3Q8TF72 ZFYVE19-202ENST00000336455 1784 ntTSL 2 BASIC14.08□□□□□ -0.15
SHROOM3Q8TF72 HSD3B2-206ENST00000543831 1783 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.15
SHROOM3Q8TF72 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 SAT1-201ENST00000379251 801 ntTSL 2 BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 SAT1-202ENST00000379253 909 ntTSL 2 BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 SAT1-203ENST00000379254 868 ntTSL 3 BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 FAU-202ENST00000434372 533 ntTSL 2 BASIC14.08□□□□□ -0.16
SHROOM3Q8TF72 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms