Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
RFC3P40938 KRT8P43-201ENST00000406052 1458 ntBASIC12.8□□□□□ -0.36
RFC3P40938 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC12.8□□□□□ -0.36
RFC3P40938 AC068760.1-201ENST00000493579 1953 ntBASIC12.8□□□□□ -0.36
RFC3P40938 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
RFC3P40938 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 AMT-256ENST00000638063 1783 ntTSL 5 BASIC12.8□□□□□ -0.36
RFC3P40938 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
RFC3P40938 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC12.8□□□□□ -0.36
RFC3P40938 CELP-201ENST00000411440 1249 ntTSL 5 BASIC12.8□□□□□ -0.36
RFC3P40938 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC12.8□□□□□ -0.36
RFC3P40938 HMGA1P1-201ENST00000415560 1062 ntBASIC12.8□□□□□ -0.36
RFC3P40938 AC092638.2-201ENST00000441105 947 ntBASIC12.8□□□□□ -0.36
RFC3P40938 AC018638.5-201ENST00000450885 754 ntBASIC12.8□□□□□ -0.36
RFC3P40938 GRPEL2P1-201ENST00000453145 339 ntBASIC12.8□□□□□ -0.36
RFC3P40938 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC12.8□□□□□ -0.36
RFC3P40938 RN7SL788P-201ENST00000460504 316 ntBASIC12.8□□□□□ -0.36
RFC3P40938 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC12.8□□□□□ -0.36
RFC3P40938 RPS23-204ENST00000507980 836 ntTSL 2 BASIC12.8□□□□□ -0.36
RFC3P40938 NAA40-205ENST00000539656 577 ntTSL 4 BASIC12.8□□□□□ -0.36
RFC3P40938 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 GAS7-216ENST00000583882 553 ntTSL 5 BASIC12.8□□□□□ -0.36
RFC3P40938 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 DBP-202ENST00000593500 712 ntTSL 2 BASIC12.8□□□□□ -0.36
RFC3P40938 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC12.8□□□□□ -0.36
RFC3P40938 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC12.8□□□□□ -0.36
RFC3P40938 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 AL590824.1-201ENST00000403828 1349 ntBASIC12.8□□□□□ -0.36
RFC3P40938 TUBB8P4-201ENST00000511806 1324 ntBASIC12.8□□□□□ -0.36
RFC3P40938 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC12.8□□□□□ -0.36
RFC3P40938 ZNF519-206ENST00000589498 2117 ntTSL 2 BASIC12.8□□□□□ -0.36
RFC3P40938 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC12.8□□□□□ -0.36
RFC3P40938 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC12.8□□□□□ -0.36
RFC3P40938 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC12.8□□□□□ -0.36
RFC3P40938 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
RFC3P40938 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
RFC3P40938 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC12.79□□□□□ -0.36
RFC3P40938 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
RFC3P40938 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
RFC3P40938 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
RFC3P40938 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
RFC3P40938 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
RFC3P40938 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
RFC3P40938 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
RFC3P40938 AC103592.1-201ENST00000394513 664 ntBASIC12.79□□□□□ -0.36
RFC3P40938 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC12.79□□□□□ -0.36
RFC3P40938 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 LYPLA2P1-203ENST00000447689 696 ntBASIC12.79□□□□□ -0.36
RFC3P40938 RN7SL818P-201ENST00000485099 259 ntBASIC12.79□□□□□ -0.36
RFC3P40938 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC12.79□□□□□ -0.36
RFC3P40938 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
RFC3P40938 KRT8P2-201ENST00000556193 944 ntBASIC12.79□□□□□ -0.36
RFC3P40938 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC12.79□□□□□ -0.36
RFC3P40938 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC12.79□□□□□ -0.36
RFC3P40938 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC12.79□□□□□ -0.36
RFC3P40938 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC12.79□□□□□ -0.36
RFC3P40938 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC12.79□□□□□ -0.36
RFC3P40938 RN7SL725P-201ENST00000606439 259 ntBASIC12.79□□□□□ -0.36
RFC3P40938 AC007250.1-201ENST00000608934 338 ntBASIC12.79□□□□□ -0.36
RFC3P40938 AL132780.4-201ENST00000624870 1135 ntBASIC12.79□□□□□ -0.36
RFC3P40938 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
RFC3P40938 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
RFC3P40938 AMT-221ENST00000538581 2038 ntTSL 2 BASIC12.79□□□□□ -0.36
RFC3P40938 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
RFC3P40938 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC12.79□□□□□ -0.36
RFC3P40938 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
RFC3P40938 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
RFC3P40938 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms