Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZNF619-204ENST00000447116 4153 ntAPPRIS P4 TSL 5 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 GTF3C1-201ENST00000356183 7018 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 RAD51D-202ENST00000345365 9988 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 USP36-202ENST00000449938 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 AC245884.11-201ENST00000616950 1734 ntTSL 3 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 BEST1-208ENST00000534553 1829 ntTSL 2 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 OLFML3-202ENST00000369551 1934 ntTSL 2 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 AC097652.1-201ENST00000511385 2114 ntTSL 5 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 FERMT1-204ENST00000536936 3229 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 PNMA6F-201ENST00000436629 3348 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 FAM110B-201ENST00000361488 3438 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 C4orf50-201ENST00000324058 5201 ntAPPRIS ALT2 TSL 2 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 AC092447.8-201ENST00000566570 4162 ntBASIC8.54□□□□□ -1.04
LINC00643Q86TS7 MON2-212ENST00000552115 3760 ntTSL 5 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 LLGL2-205ENST00000577200 3192 ntAPPRIS ALT1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 ATL2-201ENST00000378954 2868 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 ENO1-201ENST00000234590 1783 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 ZNF319-201ENST00000299237 4221 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 CNOT3-202ENST00000358389 4118 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 FLT4-206ENST00000502649 4140 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 CBLB-201ENST00000264122 6780 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 RPF1-202ENST00000370656 724 ntTSL 2 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 RN7SKP297-201ENST00000411270 282 ntBASIC8.54□□□□□ -1.04
LINC00643Q86TS7 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 AL392185.1-201ENST00000419620 395 ntTSL 2 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 PNN-202ENST00000553331 656 ntTSL 3 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 ACTL9-202ENST00000612068 1252 ntBASIC8.54□□□□□ -1.04
LINC00643Q86TS7 EVL-203ENST00000544450 3704 ntTSL 2 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 AP002360.1-203ENST00000321844 5363 ntAPPRIS P3 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 PCGF2-207ENST00000620225 2604 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 COL11A1-203ENST00000370096 7286 ntAPPRIS P4 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 SLC5A11-208ENST00000565769 2214 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 SLC6A12-201ENST00000359674 3165 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 IRF5-213ENST00000489702 2988 ntTSL 5 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 FETUB-201ENST00000265029 1627 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 CHRNB1-202ENST00000536404 1623 ntTSL 2 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 ESR1-207ENST00000440973 6466 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 CAPN9-201ENST00000271971 2362 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 RBM24-201ENST00000318204 2394 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 IL1R2-202ENST00000393414 1405 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 ARHGEF9-221ENST00000635967 2179 ntTSL 5 BASIC8.54□□□□□ -1.04
LINC00643Q86TS7 TUFT1-204ENST00000392712 2946 ntTSL 5 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 ECD-205ENST00000454759 2084 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 STXBP1-220ENST00000637521 2068 ntTSL 5 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 CDK5RAP1-201ENST00000339269 1891 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 COL14A1-203ENST00000309791 6163 ntTSL 5 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 FREM3-201ENST00000329798 6729 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 ZNF124-201ENST00000340684 1674 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 URB2-201ENST00000258243 5613 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 ZNF749-201ENST00000334181 2587 ntAPPRIS P1 TSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 CPNE4-209ENST00000512055 5431 ntAPPRIS P1 TSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 IL10RA-201ENST00000227752 3695 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 RBAK-201ENST00000353796 4125 ntAPPRIS P1 TSL 2 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 COPA-202ENST00000368069 4664 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 MEI1-201ENST00000401548 4020 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 MTMR2-202ENST00000352297 3350 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 ABCC8-202ENST00000389817 4921 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 SLC12A8-202ENST00000430155 2831 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 QRICH2-201ENST00000262765 5357 ntAPPRIS P2 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 ANKRD20A18P-201ENST00000359341 492 ntBASIC8.53□□□□□ -1.04
LINC00643Q86TS7 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC8.53□□□□□ -1.04
LINC00643Q86TS7 FAM185BP-201ENST00000443595 716 ntBASIC8.53□□□□□ -1.04
LINC00643Q86TS7 USP40-206ENST00000443711 628 ntTSL 2 BASIC8.53□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms