RNA–Protein interactions for RNA: ENST00000339269.5

CDK5RAP1-201, Transcript of CDK5 regulatory subunit associated protein 1, humanhuman

TSL 1 (best) BASIC

Gene CDK5RAP1, Length 1,891 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP1-201ENST00000339269 NISCHQ9Y2I1 1504 aa28.13■■■□□ 2.09
CDK5RAP1-201ENST00000339269 CCDC180Q9P1Z9 1646 aa24.59■■□□□ 1.53
CDK5RAP1-201ENST00000339269 ABCC9O60706 1549 aa23.93■■□□□ 1.42
CDK5RAP1-201ENST00000339269 ZCCHC6Q5VYS8 1495 aaKnown RBP23.78■■□□□ 1.4
CDK5RAP1-201ENST00000339269 SHROOM4Q9ULL8 1493 aa23.49■■□□□ 1.35
CDK5RAP1-201ENST00000339269 DCAF1Q9Y4B6 1507 aa23.19■■□□□ 1.3
CDK5RAP1-201ENST00000339269 DCAF8L2P0C7V8 631 aa23.13■■□□□ 1.29
CDK5RAP1-201ENST00000339269 RB1CC1Q8TDY2 1594 aa23.07■■□□□ 1.28
CDK5RAP1-201ENST00000339269 NACADO15069 1562 aa23.05■■□□□ 1.28
CDK5RAP1-201ENST00000339269 MYO15BQ96JP2 1530 aa22.9■■□□□ 1.26
CDK5RAP1-201ENST00000339269 SUPT5HO00267 1087 aaKnown RBP22.83■■□□□ 1.24
CDK5RAP1-201ENST00000339269 UNC13AQ9UPW8 1703 aa22.66■■□□□ 1.22
CDK5RAP1-201ENST00000339269 SCRIBQ14160 1630 aa22.48■■□□□ 1.19
CDK5RAP1-201ENST00000339269 PABPN1Q86U42 306 aaKnown RBP eCLIP22.37■■□□□ 1.174e-8■■■■■ 30
CDK5RAP1-201ENST00000339269 BICRAQ9NZM4 1560 aa22.36■■□□□ 1.17
CDK5RAP1-201ENST00000339269 CHIC1Q5VXU3 224 aa22.23■■□□□ 1.15
CDK5RAP1-201ENST00000339269 RSF1Q96T23 1441 aaPredicted RBP22.12■■□□□ 1.13
CDK5RAP1-201ENST00000339269 CECR2Q9BXF3 1484 aa21.92■■□□□ 1.1
CDK5RAP1-201ENST00000339269 MROH2BQ7Z745 1585 aa21.84■■□□□ 1.09
CDK5RAP1-201ENST00000339269 DNAJC5BQ9UF47 199 aa21.79■■□□□ 1.08
CDK5RAP1-201ENST00000339269 EIF4G1Q04637 1599 aaKnown RBP21.77■■□□□ 1.07
CDK5RAP1-201ENST00000339269 CC2D2AQ9P2K1 1620 aa21.66■■□□□ 1.06
CDK5RAP1-201ENST00000339269 WIZO95785 1651 aa21.66■■□□□ 1.06
CDK5RAP1-201ENST00000339269 BAZ1AQ9NRL2 1556 aaPredicted RBP21.6■■□□□ 1.05
CDK5RAP1-201ENST00000339269 SMARCA4P51532 1647 aa21.49■■□□□ 1.03
CDK5RAP1-201ENST00000339269 LOC105371045A0A1W2PR82 267 aa21.45■■□□□ 1.02
CDK5RAP1-201ENST00000339269 TOP2AP11388 1531 aaKnown RBP21.38■■□□□ 1.01
CDK5RAP1-201ENST00000339269 TRIM41Q8WV44 630 aa21.33■■□□□ 1.01
CDK5RAP1-201ENST00000339269 ATAD2BQ9ULI0 1458 aa21.29■■□□□ 1
CDK5RAP1-201ENST00000339269 SMARCA2P51531 1590 aa21.29■■□□□ 1
CDK5RAP1-201ENST00000339269 CCDC88BA6NC98 1476 aa21.24■□□□□ 0.99
CDK5RAP1-201ENST00000339269 PEG3Q9GZU2 1588 aa21.23■□□□□ 0.99
CDK5RAP1-201ENST00000339269 NCAPD3P42695 1498 aa21.23■□□□□ 0.99
CDK5RAP1-201ENST00000339269 HMGXB3Q12766 1538 aa21.18■□□□□ 0.98
CDK5RAP1-201ENST00000339269 BAZ1BQ9UIG0 1483 aaKnown RBP21.15■□□□□ 0.98
CDK5RAP1-201ENST00000339269 FAM9AQ8IZU1 332 aaPredicted RBP21.07■□□□□ 0.96
CDK5RAP1-201ENST00000339269 PCGF6Q9BYE7 350 aa21.03■□□□□ 0.96
CDK5RAP1-201ENST00000339269 ABCC8Q09428 1581 aa21.03■□□□□ 0.96
CDK5RAP1-201ENST00000339269 HRCP23327 699 aa20.94■□□□□ 0.94
CDK5RAP1-201ENST00000339269 EHMT2Q96KQ7 1210 aa20.8■□□□□ 0.92
CDK5RAP1-201ENST00000339269 TRIM26Q12899 539 aaPredicted RBP20.79■□□□□ 0.92
CDK5RAP1-201ENST00000339269 SOGA1O94964 1423 aa20.78■□□□□ 0.92
CDK5RAP1-201ENST00000339269 NESP48681 1621 aa20.75■□□□□ 0.91
CDK5RAP1-201ENST00000339269 WRNQ14191 1432 aaPredicted RBP eCLIP20.72■□□□□ 0.91
CDK5RAP1-201ENST00000339269 RUSC2Q8N2Y8 1516 aa20.71■□□□□ 0.91
CDK5RAP1-201ENST00000339269 LAMC3Q9Y6N6 1575 aa20.7■□□□□ 0.9
CDK5RAP1-201ENST00000339269 SYNJ1O43426 1573 aa20.7■□□□□ 0.9
CDK5RAP1-201ENST00000339269 EEA1Q15075 1411 aa20.65■□□□□ 0.9
CDK5RAP1-201ENST00000339269 CADPSQ9ULU8 1353 aa20.63■□□□□ 0.89
CDK5RAP1-201ENST00000339269 ERCC6Q03468 1493 aa20.61■□□□□ 0.89
CDK5RAP1-201ENST00000339269 KIF21AQ7Z4S6 1674 aa20.58■□□□□ 0.88
CDK5RAP1-201ENST00000339269 CSRNP3Q8WYN3 585 aa20.56■□□□□ 0.88
CDK5RAP1-201ENST00000339269 TNIKQ9UKE5 1360 aa20.55■□□□□ 0.88
CDK5RAP1-201ENST00000339269 CFTRP13569 1480 aa20.54■□□□□ 0.88
CDK5RAP1-201ENST00000339269 PRDM2Q13029 1718 aa20.53■□□□□ 0.88
CDK5RAP1-201ENST00000339269 PDS5BQ9NTI5 1447 aa20.53■□□□□ 0.88
CDK5RAP1-201ENST00000339269 CEP162Q5TB80 1403 aa20.52■□□□□ 0.88
CDK5RAP1-201ENST00000339269 PPARGC1BQ86YN6 1023 aaKnown RBP20.5■□□□□ 0.87
CDK5RAP1-201ENST00000339269 TOP2BQ02880 1626 aa20.48■□□□□ 0.87
CDK5RAP1-201ENST00000339269 GOLGA3Q08378 1498 aa20.47■□□□□ 0.87
CDK5RAP1-201ENST00000339269 BIVM-ERCC5R4GMW8 1640 aa20.44■□□□□ 0.86
CDK5RAP1-201ENST00000339269 KIF21BO75037 1637 aa20.43■□□□□ 0.86
CDK5RAP1-201ENST00000339269 FANCD2Q9BXW9 1451 aa20.43■□□□□ 0.86
CDK5RAP1-201ENST00000339269 THOC2Q8NI27 1593 aaKnown RBP20.41■□□□□ 0.86
CDK5RAP1-201ENST00000339269 CEP164Q9UPV0 1460 aa20.4■□□□□ 0.86
CDK5RAP1-201ENST00000339269 CUX1P39880 1505 aa20.36■□□□□ 0.85
CDK5RAP1-201ENST00000339269 MRC2Q9UBG0 1479 aa20.32■□□□□ 0.84
CDK5RAP1-201ENST00000339269 UBTFP17480 764 aaKnown RBP20.31■□□□□ 0.84
CDK5RAP1-201ENST00000339269 CUX2O14529 1486 aa20.3■□□□□ 0.84
CDK5RAP1-201ENST00000339269 RAPGEF2Q9Y4G8 1499 aa20.3■□□□□ 0.84
CDK5RAP1-201ENST00000339269 WDR62O43379 1518 aa20.26■□□□□ 0.83
CDK5RAP1-201ENST00000339269 PRXQ9BXM0 1461 aa20.22■□□□□ 0.83
CDK5RAP1-201ENST00000339269 URB2Q14146 1524 aaKnown RBP20.22■□□□□ 0.83
CDK5RAP1-201ENST00000339269 CLIP1P30622 1438 aa20.19■□□□□ 0.82
CDK5RAP1-201ENST00000339269 ERICH3Q5RHP9 1530 aa20.16■□□□□ 0.82
CDK5RAP1-201ENST00000339269 ZEB1P37275 1124 aaPredicted RBP20.15■□□□□ 0.82
CDK5RAP1-201ENST00000339269 TOPBP1Q92547 1522 aa20.12■□□□□ 0.81
CDK5RAP1-201ENST00000339269 DNMBPQ6XZF7 1577 aa20.12■□□□□ 0.81
CDK5RAP1-201ENST00000339269 VPS8Q8N3P4 1428 aa20.1■□□□□ 0.81
CDK5RAP1-201ENST00000339269 KIF27Q86VH2 1401 aa20.09■□□□□ 0.81
CDK5RAP1-201ENST00000339269 TTBK1Q5TCY1 1321 aaPredicted RBP20.07■□□□□ 0.8
CDK5RAP1-201ENST00000339269 ARAP1Q96P48 1450 aa20.01■□□□□ 0.79
CDK5RAP1-201ENST00000339269 FGD5Q6ZNL6 1462 aa20■□□□□ 0.79
CDK5RAP1-201ENST00000339269 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.99■□□□□ 0.79
CDK5RAP1-201ENST00000339269 IGF1RP08069 1367 aa19.96■□□□□ 0.79
CDK5RAP1-201ENST00000339269 POLA1P09884 1462 aaPredicted RBP19.96■□□□□ 0.79
CDK5RAP1-201ENST00000339269 IFT140Q96RY7 1462 aa19.94■□□□□ 0.78
CDK5RAP1-201ENST00000339269 TARBP1Q13395 1621 aaKnown RBP19.91■□□□□ 0.78
CDK5RAP1-201ENST00000339269 RANGAP1P46060 587 aaPredicted RBP19.9■□□□□ 0.78
CDK5RAP1-201ENST00000339269 RAD54L2Q9Y4B4 1467 aa19.89■□□□□ 0.77
CDK5RAP1-201ENST00000339269 ZNF608Q9ULD9 1512 aaPredicted RBP19.86■□□□□ 0.77
CDK5RAP1-201ENST00000339269 ARHGAP35Q9NRY4 1499 aa19.86■□□□□ 0.77
CDK5RAP1-201ENST00000339269 CCER1Q8TC90 406 aaPredicted RBP19.86■□□□□ 0.77
CDK5RAP1-201ENST00000339269 EIF4G3O43432 1585 aaKnown RBP19.83■□□□□ 0.76
CDK5RAP1-201ENST00000339269 CARMIL1Q5VZK9 1371 aa19.81■□□□□ 0.76
CDK5RAP1-201ENST00000339269 WDR97A6NE52 1622 aa19.81■□□□□ 0.76
CDK5RAP1-201ENST00000339269 ABCA10Q8WWZ4 1543 aa19.81■□□□□ 0.76
CDK5RAP1-201ENST00000339269 AQRO60306 1485 aaKnown RBP eCLIP19.77■□□□□ 0.764e-7■■■■□ 22.9
CDK5RAP1-201ENST00000339269 TDRD9Q8NDG6 1382 aaKnown RBP19.75■□□□□ 0.75
CDK5RAP1-201ENST00000339269 KANK4Q5T7N3 995 aaPredicted RBP19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms