Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
H3F3AP84243 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC12.47□□□□□ -0.41
H3F3AP84243 DGCR9-201ENST00000609630 2415 ntBASIC12.47□□□□□ -0.41
H3F3AP84243 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
H3F3AP84243 AC073869.1-201ENST00000415574 2762 ntBASIC12.47□□□□□ -0.41
H3F3AP84243 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
H3F3AP84243 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 AC073548.1-201ENST00000624088 1882 ntBASIC12.46□□□□□ -0.41
H3F3AP84243 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
H3F3AP84243 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC12.46□□□□□ -0.41
H3F3AP84243 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
H3F3AP84243 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC12.46□□□□□ -0.41
H3F3AP84243 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC12.46□□□□□ -0.41
H3F3AP84243 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC12.46□□□□□ -0.41
H3F3AP84243 Z98885.3-201ENST00000624882 1757 ntBASIC12.46□□□□□ -0.41
H3F3AP84243 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
H3F3AP84243 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC12.46□□□□□ -0.41
H3F3AP84243 LSS-211ENST00000522411 2523 ntTSL 2 BASIC12.46□□□□□ -0.41
H3F3AP84243 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 PDXDC2P-206ENST00000534700 1315 ntBASIC12.46□□□□□ -0.41
H3F3AP84243 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC12.46□□□□□ -0.41
H3F3AP84243 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC12.46□□□□□ -0.41
H3F3AP84243 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC12.46□□□□□ -0.41
H3F3AP84243 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC12.46□□□□□ -0.41
H3F3AP84243 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 HLA-DQB2-229ENST00000411527 1059 ntBASIC12.46□□□□□ -0.41
H3F3AP84243 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC12.46□□□□□ -0.41
H3F3AP84243 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC12.46□□□□□ -0.41
H3F3AP84243 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC12.46□□□□□ -0.41
H3F3AP84243 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC12.46□□□□□ -0.41
H3F3AP84243 IGLV3-15-201ENST00000518356 244 ntBASIC12.46□□□□□ -0.41
H3F3AP84243 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 POLD4-208ENST00000532830 904 ntTSL 3 BASIC12.46□□□□□ -0.41
H3F3AP84243 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC12.46□□□□□ -0.41
H3F3AP84243 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC12.46□□□□□ -0.41
H3F3AP84243 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC12.46□□□□□ -0.41
H3F3AP84243 MIR4522-201ENST00000584932 87 ntBASIC12.46□□□□□ -0.41
H3F3AP84243 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC12.46□□□□□ -0.41
H3F3AP84243 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC12.46□□□□□ -0.41
H3F3AP84243 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
H3F3AP84243 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.42
H3F3AP84243 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
H3F3AP84243 AC009474.1-201ENST00000455096 1565 ntBASIC12.46□□□□□ -0.42
H3F3AP84243 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC12.46□□□□□ -0.42
H3F3AP84243 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
H3F3AP84243 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
H3F3AP84243 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
H3F3AP84243 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
H3F3AP84243 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
H3F3AP84243 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
H3F3AP84243 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC12.46□□□□□ -0.42
H3F3AP84243 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC12.46□□□□□ -0.42
H3F3AP84243 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
H3F3AP84243 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
H3F3AP84243 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC12.46□□□□□ -0.42
H3F3AP84243 GOLGA8UP-201ENST00000527159 1755 ntBASIC12.46□□□□□ -0.42
H3F3AP84243 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
H3F3AP84243 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC12.46□□□□□ -0.42
H3F3AP84243 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC12.46□□□□□ -0.42
H3F3AP84243 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC12.46□□□□□ -0.42
H3F3AP84243 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
H3F3AP84243 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 DDC-204ENST00000426377 1700 ntTSL 3 BASIC12.45□□□□□ -0.42
H3F3AP84243 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC12.45□□□□□ -0.42
H3F3AP84243 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
H3F3AP84243 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 GALC-206ENST00000544807 2528 ntTSL 2 BASIC12.45□□□□□ -0.42
H3F3AP84243 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC12.45□□□□□ -0.42
H3F3AP84243 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
H3F3AP84243 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 COL6A4P2-202ENST00000504443 2753 ntBASIC12.45□□□□□ -0.42
H3F3AP84243 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
H3F3AP84243 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms