Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 ROBO1-212ENST00000618833 7492 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
TPM4P67936 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.7■□□□□ 0.1
TPM4P67936 SLC6A19-201ENST00000304460 5174 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 FOXK1-201ENST00000328914 11181 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
TPM4P67936 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC15.7■□□□□ 0.1
TPM4P67936 NBPF12-208ENST00000617931 7061 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
TPM4P67936 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC15.7■□□□□ 0.1
TPM4P67936 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC15.7■□□□□ 0.1
TPM4P67936 BAIAP3-207ENST00000562208 3663 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
TPM4P67936 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
TPM4P67936 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC15.7■□□□□ 0.1
TPM4P67936 GLI3-201ENST00000395925 8208 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
TPM4P67936 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
TPM4P67936 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
TPM4P67936 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC15.7■□□□□ 0.1
TPM4P67936 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC15.7■□□□□ 0.1
TPM4P67936 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
TPM4P67936 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.7■□□□□ 0.1
TPM4P67936 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.7■□□□□ 0.1
TPM4P67936 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.7■□□□□ 0.1
TPM4P67936 RFPL4AP1-201ENST00000530883 850 ntBASIC15.7■□□□□ 0.1
TPM4P67936 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
TPM4P67936 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.7■□□□□ 0.1
TPM4P67936 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.7■□□□□ 0.1
TPM4P67936 AC009884.2-201ENST00000603110 324 ntBASIC15.7■□□□□ 0.1
TPM4P67936 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
TPM4P67936 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.7■□□□□ 0.1
TPM4P67936 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 ESR2-213ENST00000557772 5458 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 PTPRN2-202ENST00000389416 4692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TPM4P67936 OS9-203ENST00000389142 2457 ntTSL 5 BASIC15.7■□□□□ 0.1
TPM4P67936 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC15.7■□□□□ 0.1
TPM4P67936 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
TPM4P67936 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
TPM4P67936 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 C10orf105-201ENST00000398786 4730 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
TPM4P67936 SLC16A2-201ENST00000587091 4161 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 LINC00638-201ENST00000555578 2518 ntBASIC15.69■□□□□ 0.1
TPM4P67936 E2F3P2-201ENST00000447755 1422 ntBASIC15.69■□□□□ 0.1
TPM4P67936 MYH3-205ENST00000583535 6037 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
TPM4P67936 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 RAB3IP-212ENST00000550536 9646 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC15.69■□□□□ 0.1
TPM4P67936 AC092123.2-201ENST00000611189 5421 ntBASIC15.69■□□□□ 0.1
TPM4P67936 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC15.69■□□□□ 0.1
TPM4P67936 MESD-201ENST00000261758 4264 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC15.69■□□□□ 0.1
TPM4P67936 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
TPM4P67936 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.69■□□□□ 0.1
TPM4P67936 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
TPM4P67936 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
TPM4P67936 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
TPM4P67936 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.69■□□□□ 0.1
TPM4P67936 LINC02560-201ENST00000596379 459 ntBASIC15.69■□□□□ 0.1
TPM4P67936 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.69■□□□□ 0.1
TPM4P67936 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.69■□□□□ 0.1
TPM4P67936 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
TPM4P67936 AL591163.1-201ENST00000641757 987 ntBASIC15.69■□□□□ 0.1
TPM4P67936 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
TPM4P67936 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 HDAC7-202ENST00000354334 4065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 HDAC7-201ENST00000080059 4095 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
TPM4P67936 C2-209ENST00000452323 1999 ntTSL 2 BASIC15.69■□□□□ 0.1
TPM4P67936 AC036108.2-201ENST00000566974 2562 ntTSL 2 BASIC15.69■□□□□ 0.1
TPM4P67936 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
TPM4P67936 DYSF-208ENST00000410020 6657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TPM4P67936 KIAA0319-205ENST00000543707 5314 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
TPM4P67936 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM4P67936 ZCCHC14-201ENST00000268616 7102 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM4P67936 FMO6P-201ENST00000236166 1620 ntBASIC15.68■□□□□ 0.1
TPM4P67936 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
TPM4P67936 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM4P67936 RAD1-203ENST00000382038 5770 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TPM4P67936 RP1-207ENST00000637698 6177 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TPM4P67936 AC104758.3-203ENST00000562938 2123 ntBASIC15.68■□□□□ 0.1
TPM4P67936 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms