Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
HMGA1P17096 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
HMGA1P17096 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
HMGA1P17096 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.23□□□□□ -0.13
HMGA1P17096 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
HMGA1P17096 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGA1P17096 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC14.22□□□□□ -0.13
HMGA1P17096 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 AC064850.1-201ENST00000413279 1398 ntBASIC14.22□□□□□ -0.13
HMGA1P17096 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HMGA1P17096 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HMGA1P17096 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 SNX18-202ENST00000343017 3140 ntBASIC14.22□□□□□ -0.13
HMGA1P17096 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC14.22□□□□□ -0.13
HMGA1P17096 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC14.22□□□□□ -0.13
HMGA1P17096 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.22□□□□□ -0.13
HMGA1P17096 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
HMGA1P17096 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HMGA1P17096 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 SNORD23-201ENST00000408876 110 ntBASIC14.22□□□□□ -0.13
HMGA1P17096 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC14.22□□□□□ -0.13
HMGA1P17096 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC14.22□□□□□ -0.13
HMGA1P17096 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 RBM4-207ENST00000506523 654 ntTSL 3 BASIC14.22□□□□□ -0.13
HMGA1P17096 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC14.22□□□□□ -0.13
HMGA1P17096 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC14.22□□□□□ -0.13
HMGA1P17096 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC14.22□□□□□ -0.13
HMGA1P17096 KNOP1P1-201ENST00000542108 989 ntBASIC14.22□□□□□ -0.13
HMGA1P17096 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC14.22□□□□□ -0.13
HMGA1P17096 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC14.22□□□□□ -0.13
HMGA1P17096 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC14.22□□□□□ -0.13
HMGA1P17096 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
HMGA1P17096 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 STX3-207ENST00000633708 3111 ntTSL 5 BASIC14.22□□□□□ -0.13
HMGA1P17096 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC14.22□□□□□ -0.13
HMGA1P17096 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGA1P17096 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HMGA1P17096 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.21□□□□□ -0.13
HMGA1P17096 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC14.21□□□□□ -0.13
HMGA1P17096 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.13
HMGA1P17096 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
HMGA1P17096 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.21□□□□□ -0.13
HMGA1P17096 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC14.21□□□□□ -0.13
HMGA1P17096 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC14.21□□□□□ -0.13
HMGA1P17096 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
HMGA1P17096 KRT8P25-201ENST00000473150 1456 ntBASIC14.21□□□□□ -0.13
HMGA1P17096 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.21□□□□□ -0.13
HMGA1P17096 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
HMGA1P17096 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC14.21□□□□□ -0.13
HMGA1P17096 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
HMGA1P17096 SERF2-204ENST00000402131 586 ntTSL 2 BASIC14.21□□□□□ -0.13
HMGA1P17096 PGAM1P11-201ENST00000416729 680 ntBASIC14.21□□□□□ -0.13
HMGA1P17096 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC14.21□□□□□ -0.13
HMGA1P17096 GOLGA6L16P-201ENST00000441780 1299 ntBASIC14.21□□□□□ -0.13
HMGA1P17096 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC14.21□□□□□ -0.13
HMGA1P17096 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC14.21□□□□□ -0.13
HMGA1P17096 LINC02376-201ENST00000536330 724 ntTSL 3 BASIC14.21□□□□□ -0.13
HMGA1P17096 METTL7AP1-201ENST00000547343 496 ntBASIC14.21□□□□□ -0.13
HMGA1P17096 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC14.21□□□□□ -0.13
HMGA1P17096 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 RN7SL605P-201ENST00000577229 281 ntBASIC14.21□□□□□ -0.13
HMGA1P17096 KF455155.1-201ENST00000604493 303 ntBASIC14.21□□□□□ -0.13
HMGA1P17096 AL139339.2-201ENST00000608063 657 ntBASIC14.21□□□□□ -0.13
HMGA1P17096 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC14.21□□□□□ -0.13
HMGA1P17096 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.21□□□□□ -0.13
HMGA1P17096 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HMGA1P17096 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms