Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LIMD2Q9BT23 AC138932.1-201ENST00000534164 6830 ntBASIC13.22□□□□□ -0.29
LIMD2Q9BT23 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LIMD2Q9BT23 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LIMD2Q9BT23 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 BEX3-202ENST00000372634 753 ntTSL 2 BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 AL033527.3-201ENST00000566366 1196 ntBASIC13.21□□□□□ -0.29
LIMD2Q9BT23 MIR4281-201ENST00000580852 62 ntBASIC13.21□□□□□ -0.29
LIMD2Q9BT23 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 CASK-201ENST00000378154 2494 ntTSL 5 BASIC13.21□□□□□ -0.29
LIMD2Q9BT23 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
LIMD2Q9BT23 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
LIMD2Q9BT23 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC13.21□□□□□ -0.3
LIMD2Q9BT23 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC13.21□□□□□ -0.3
LIMD2Q9BT23 C9orf163-202ENST00000624034 2573 ntBASIC13.21□□□□□ -0.3
LIMD2Q9BT23 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LIMD2Q9BT23 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
LIMD2Q9BT23 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 LBH-205ENST00000407930 756 ntTSL 2 BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
LIMD2Q9BT23 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LIMD2Q9BT23 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LIMD2Q9BT23 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
LIMD2Q9BT23 AC004812.2-201ENST00000611079 2094 ntBASIC13.17□□□□□ -0.3
LIMD2Q9BT23 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LIMD2Q9BT23 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
LIMD2Q9BT23 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
LIMD2Q9BT23 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
LIMD2Q9BT23 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
LIMD2Q9BT23 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LIMD2Q9BT23 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
LIMD2Q9BT23 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC13.17□□□□□ -0.3
LIMD2Q9BT23 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC13.17□□□□□ -0.3
LIMD2Q9BT23 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
LIMD2Q9BT23 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LIMD2Q9BT23 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
LIMD2Q9BT23 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
LIMD2Q9BT23 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC13.16□□□□□ -0.3
LIMD2Q9BT23 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms