Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC24.46■■□□□ 1.51
LRCH3Q96II8 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC24.45■■□□□ 1.51
LRCH3Q96II8 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC24.45■■□□□ 1.51
LRCH3Q96II8 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
LRCH3Q96II8 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC24.45■■□□□ 1.5
LRCH3Q96II8 SHD-204ENST00000599689 1729 ntTSL 5 BASIC24.45■■□□□ 1.5
LRCH3Q96II8 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC24.45■■□□□ 1.5
LRCH3Q96II8 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
LRCH3Q96II8 COX20-201ENST00000366528 568 ntTSL 2 BASIC24.45■■□□□ 1.5
LRCH3Q96II8 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.5
LRCH3Q96II8 AC069152.1-201ENST00000438030 544 ntBASIC24.45■■□□□ 1.5
LRCH3Q96II8 TSPY6P-201ENST00000448518 926 ntBASIC24.45■■□□□ 1.5
LRCH3Q96II8 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC24.45■■□□□ 1.5
LRCH3Q96II8 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC24.45■■□□□ 1.5
LRCH3Q96II8 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
LRCH3Q96II8 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC24.45■■□□□ 1.5
LRCH3Q96II8 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC24.45■■□□□ 1.5
LRCH3Q96II8 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
LRCH3Q96II8 AC131274.2-201ENST00000580697 1507 ntBASIC24.45■■□□□ 1.5
LRCH3Q96II8 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
LRCH3Q96II8 AP004607.4-201ENST00000530158 1459 ntBASIC24.45■■□□□ 1.5
LRCH3Q96II8 AC004854.2-201ENST00000608450 1441 ntBASIC24.44■■□□□ 1.5
LRCH3Q96II8 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC24.44■■□□□ 1.5
LRCH3Q96II8 LHPP-203ENST00000392757 840 ntTSL 3 BASIC24.44■■□□□ 1.5
LRCH3Q96II8 AL121832.2-201ENST00000610979 668 ntBASIC24.44■■□□□ 1.5
LRCH3Q96II8 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
LRCH3Q96II8 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
LRCH3Q96II8 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
LRCH3Q96II8 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
LRCH3Q96II8 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC24.43■■□□□ 1.5
LRCH3Q96II8 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
LRCH3Q96II8 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
LRCH3Q96II8 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC24.43■■□□□ 1.5
LRCH3Q96II8 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC24.43■■□□□ 1.5
LRCH3Q96II8 AC083906.2-201ENST00000511578 360 ntBASIC24.43■■□□□ 1.5
LRCH3Q96II8 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
LRCH3Q96II8 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC24.43■■□□□ 1.5
LRCH3Q96II8 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC24.43■■□□□ 1.5
LRCH3Q96II8 TBCB-214ENST00000629269 413 ntTSL 5 BASIC24.43■■□□□ 1.5
LRCH3Q96II8 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
LRCH3Q96II8 AC091060.1-201ENST00000623524 1766 ntBASIC24.43■■□□□ 1.5
LRCH3Q96II8 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
LRCH3Q96II8 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
LRCH3Q96II8 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC24.42■■□□□ 1.5
LRCH3Q96II8 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
LRCH3Q96II8 AL050303.2-201ENST00000619798 666 ntBASIC24.42■■□□□ 1.5
LRCH3Q96II8 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
LRCH3Q96II8 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
LRCH3Q96II8 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
LRCH3Q96II8 GUSBP6-202ENST00000438529 1198 ntBASIC24.41■■□□□ 1.5
LRCH3Q96II8 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC24.41■■□□□ 1.5
LRCH3Q96II8 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC24.41■■□□□ 1.5
LRCH3Q96II8 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC24.41■■□□□ 1.5
LRCH3Q96II8 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC24.41■■□□□ 1.5
LRCH3Q96II8 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
LRCH3Q96II8 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
LRCH3Q96II8 LINC01003-201ENST00000564834 1764 ntBASIC24.4■■□□□ 1.5
LRCH3Q96II8 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
LRCH3Q96II8 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
LRCH3Q96II8 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
LRCH3Q96II8 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
LRCH3Q96II8 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
LRCH3Q96II8 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
LRCH3Q96II8 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC24.4■■□□□ 1.5
LRCH3Q96II8 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC24.4■■□□□ 1.5
LRCH3Q96II8 TPRG1LP1-201ENST00000598702 760 ntBASIC24.4■■□□□ 1.5
LRCH3Q96II8 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC24.4■■□□□ 1.5
LRCH3Q96II8 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC24.4■■□□□ 1.5
LRCH3Q96II8 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
LRCH3Q96II8 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC24.39■■□□□ 1.5
LRCH3Q96II8 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
LRCH3Q96II8 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
LRCH3Q96II8 SHF-208ENST00000560734 1731 ntTSL 3 BASIC24.39■■□□□ 1.5
LRCH3Q96II8 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC24.39■■□□□ 1.5
LRCH3Q96II8 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC24.39■■□□□ 1.5
LRCH3Q96II8 KRT18P29-201ENST00000397031 1267 ntBASIC24.39■■□□□ 1.49
LRCH3Q96II8 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
LRCH3Q96II8 RPS2P52-201ENST00000469610 820 ntBASIC24.39■■□□□ 1.49
LRCH3Q96II8 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC24.39■■□□□ 1.49
LRCH3Q96II8 ITM2C-210ENST00000620962 501 ntBASIC24.39■■□□□ 1.49
LRCH3Q96II8 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.39■■□□□ 1.49
LRCH3Q96II8 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
LRCH3Q96II8 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.39■■□□□ 1.49
LRCH3Q96II8 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
LRCH3Q96II8 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
LRCH3Q96II8 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC24.38■■□□□ 1.49
LRCH3Q96II8 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
LRCH3Q96II8 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
LRCH3Q96II8 POU5F1P3-201ENST00000428824 1078 ntBASIC24.38■■□□□ 1.49
LRCH3Q96II8 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC24.38■■□□□ 1.49
LRCH3Q96II8 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC24.38■■□□□ 1.49
LRCH3Q96II8 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.38■■□□□ 1.49
LRCH3Q96II8 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
LRCH3Q96II8 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
LRCH3Q96II8 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
LRCH3Q96II8 PRORSD1P-201ENST00000295112 541 ntBASIC24.37■■□□□ 1.49
LRCH3Q96II8 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC24.37■■□□□ 1.49
LRCH3Q96II8 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
LRCH3Q96II8 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC24.37■■□□□ 1.49
LRCH3Q96II8 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC24.37■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms