Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SOX2P48431 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SOX2P48431 AC129492.7-201ENST00000622992 756 ntBASIC19.66■□□□□ 0.74
SOX2P48431 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SOX2P48431 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SOX2P48431 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
SOX2P48431 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SOX2P48431 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.65■□□□□ 0.74
SOX2P48431 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SOX2P48431 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SOX2P48431 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SOX2P48431 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.65■□□□□ 0.74
SOX2P48431 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SOX2P48431 U85056.1-201ENST00000616429 682 ntBASIC19.65■□□□□ 0.74
SOX2P48431 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SOX2P48431 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.65■□□□□ 0.74
SOX2P48431 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
SOX2P48431 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.74
SOX2P48431 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
SOX2P48431 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
SOX2P48431 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SOX2P48431 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SOX2P48431 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SOX2P48431 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
SOX2P48431 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.64■□□□□ 0.73
SOX2P48431 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SOX2P48431 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.64■□□□□ 0.73
SOX2P48431 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SOX2P48431 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SOX2P48431 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SOX2P48431 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SOX2P48431 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SOX2P48431 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SOX2P48431 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.63■□□□□ 0.73
SOX2P48431 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.63■□□□□ 0.73
SOX2P48431 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SOX2P48431 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.63■□□□□ 0.73
SOX2P48431 AC079630.1-202ENST00000618127 1840 ntBASIC19.62■□□□□ 0.73
SOX2P48431 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.62■□□□□ 0.73
SOX2P48431 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SOX2P48431 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SOX2P48431 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SOX2P48431 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SOX2P48431 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
SOX2P48431 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.62■□□□□ 0.73
SOX2P48431 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.62■□□□□ 0.73
SOX2P48431 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SOX2P48431 AC127496.7-201ENST00000625110 1798 ntBASIC19.62■□□□□ 0.73
SOX2P48431 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SOX2P48431 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SOX2P48431 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SOX2P48431 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SOX2P48431 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
SOX2P48431 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.61■□□□□ 0.73
SOX2P48431 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.61■□□□□ 0.73
SOX2P48431 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.61■□□□□ 0.73
SOX2P48431 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
SOX2P48431 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX2P48431 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX2P48431 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX2P48431 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX2P48431 RARRES2P2-201ENST00000394842 485 ntBASIC19.61■□□□□ 0.73
SOX2P48431 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC19.61■□□□□ 0.73
SOX2P48431 HYI-210ENST00000486909 905 ntTSL 5 BASIC19.61■□□□□ 0.73
SOX2P48431 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.61■□□□□ 0.73
SOX2P48431 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC19.61■□□□□ 0.73
SOX2P48431 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX2P48431 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX2P48431 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.61■□□□□ 0.73
SOX2P48431 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX2P48431 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SOX2P48431 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX2P48431 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX2P48431 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
SOX2P48431 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.6■□□□□ 0.73
SOX2P48431 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.6■□□□□ 0.73
SOX2P48431 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SOX2P48431 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SOX2P48431 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
SOX2P48431 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.6■□□□□ 0.73
SOX2P48431 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SOX2P48431 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX2P48431 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
SOX2P48431 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX2P48431 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX2P48431 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX2P48431 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SOX2P48431 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX2P48431 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX2P48431 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SOX2P48431 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SOX2P48431 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX2P48431 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.59■□□□□ 0.73
SOX2P48431 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SOX2P48431 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SOX2P48431 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.58■□□□□ 0.73
SOX2P48431 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SOX2P48431 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
SOX2P48431 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SOX2P48431 KRT18P60-201ENST00000312876 1297 ntBASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms