Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC18.09■□□□□ 0.49
CDX1P47902 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.09■□□□□ 0.49
CDX1P47902 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDX1P47902 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDX1P47902 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.08■□□□□ 0.49
CDX1P47902 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
CDX1P47902 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CDX1P47902 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC18.08■□□□□ 0.48
CDX1P47902 UNC93B8-201ENST00000511903 705 ntBASIC18.08■□□□□ 0.48
CDX1P47902 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
CDX1P47902 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDX1P47902 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.08■□□□□ 0.48
CDX1P47902 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDX1P47902 AF131216.4-201ENST00000638924 1588 ntBASIC18.08■□□□□ 0.48
CDX1P47902 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CDX1P47902 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CDX1P47902 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDX1P47902 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC18.07■□□□□ 0.48
CDX1P47902 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDX1P47902 SLC6A10P-202ENST00000431994 2058 ntBASIC18.07■□□□□ 0.48
CDX1P47902 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
CDX1P47902 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC18.07■□□□□ 0.48
CDX1P47902 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.07■□□□□ 0.48
CDX1P47902 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CDX1P47902 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CDX1P47902 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDX1P47902 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CDX1P47902 AC127496.7-201ENST00000625110 1798 ntBASIC18.07■□□□□ 0.48
CDX1P47902 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDX1P47902 NFE2L3P1-201ENST00000588207 1959 ntBASIC18.06■□□□□ 0.48
CDX1P47902 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.06■□□□□ 0.48
CDX1P47902 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC18.06■□□□□ 0.48
CDX1P47902 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDX1P47902 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDX1P47902 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC18.06■□□□□ 0.48
CDX1P47902 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDX1P47902 KRT16P3-201ENST00000439127 1283 ntBASIC18.06■□□□□ 0.48
CDX1P47902 TSPY9P-201ENST00000440215 945 ntBASIC18.06■□□□□ 0.48
CDX1P47902 TSPY11P-201ENST00000442607 1045 ntBASIC18.06■□□□□ 0.48
CDX1P47902 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC18.06■□□□□ 0.48
CDX1P47902 AC131212.1-201ENST00000613771 668 ntBASIC18.06■□□□□ 0.48
CDX1P47902 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CDX1P47902 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDX1P47902 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CDX1P47902 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CDX1P47902 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDX1P47902 DUSP8P3-201ENST00000399571 1760 ntBASIC18.06■□□□□ 0.48
CDX1P47902 AC092667.1-201ENST00000434301 2586 ntBASIC18.06■□□□□ 0.48
CDX1P47902 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CDX1P47902 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDX1P47902 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CDX1P47902 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDX1P47902 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDX1P47902 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDX1P47902 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC18.05■□□□□ 0.48
CDX1P47902 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDX1P47902 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC18.05■□□□□ 0.48
CDX1P47902 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDX1P47902 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CDX1P47902 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDX1P47902 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CDX1P47902 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC18.05■□□□□ 0.48
CDX1P47902 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
CDX1P47902 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC18.05■□□□□ 0.48
CDX1P47902 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CDX1P47902 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX1P47902 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX1P47902 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CDX1P47902 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CDX1P47902 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDX1P47902 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX1P47902 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX1P47902 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX1P47902 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC18.04■□□□□ 0.48
CDX1P47902 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX1P47902 SENP5-202ENST00000419026 973 ntTSL 3 BASIC18.04■□□□□ 0.48
CDX1P47902 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC18.04■□□□□ 0.48
CDX1P47902 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX1P47902 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX1P47902 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC18.04■□□□□ 0.48
CDX1P47902 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CDX1P47902 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC18.04■□□□□ 0.48
CDX1P47902 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX1P47902 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
CDX1P47902 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CDX1P47902 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.03■□□□□ 0.48
CDX1P47902 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX1P47902 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CDX1P47902 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX1P47902 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX1P47902 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX1P47902 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX1P47902 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.03■□□□□ 0.48
CDX1P47902 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX1P47902 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CDX1P47902 LBH-205ENST00000407930 756 ntTSL 2 BASIC18.03■□□□□ 0.48
CDX1P47902 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CDX1P47902 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC18.03■□□□□ 0.48
CDX1P47902 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC18.03■□□□□ 0.48
CDX1P47902 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms