Protein–RNA interactions for Protein: O75382

TRIM3, Tripartite motif-containing protein 3, humanhuman

Predicted RBP Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3O75382 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
TRIM3O75382 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM3O75382 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM3O75382 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM3O75382 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM3O75382 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM3O75382 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM3O75382 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
TRIM3O75382 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.75■□□□□ 0.91
TRIM3O75382 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM3O75382 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM3O75382 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM3O75382 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM3O75382 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.75■□□□□ 0.91
TRIM3O75382 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM3O75382 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM3O75382 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
TRIM3O75382 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM3O75382 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM3O75382 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM3O75382 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM3O75382 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM3O75382 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM3O75382 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
TRIM3O75382 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
TRIM3O75382 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM3O75382 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.74■□□□□ 0.91
TRIM3O75382 DUSP8P5-201ENST00000422884 1815 ntBASIC20.74■□□□□ 0.91
TRIM3O75382 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM3O75382 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM3O75382 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.73■□□□□ 0.91
TRIM3O75382 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM3O75382 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM3O75382 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM3O75382 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM3O75382 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM3O75382 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM3O75382 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM3O75382 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM3O75382 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM3O75382 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM3O75382 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM3O75382 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM3O75382 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM3O75382 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM3O75382 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM3O75382 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM3O75382 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
TRIM3O75382 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM3O75382 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.72■□□□□ 0.91
TRIM3O75382 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.72■□□□□ 0.91
TRIM3O75382 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM3O75382 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM3O75382 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM3O75382 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
TRIM3O75382 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM3O75382 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM3O75382 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM3O75382 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM3O75382 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM3O75382 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.71■□□□□ 0.91
TRIM3O75382 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.71■□□□□ 0.91
TRIM3O75382 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM3O75382 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
TRIM3O75382 AC004812.2-201ENST00000611079 2094 ntBASIC20.71■□□□□ 0.91
TRIM3O75382 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM3O75382 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
TRIM3O75382 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM3O75382 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.91
TRIM3O75382 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.7■□□□□ 0.9
TRIM3O75382 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
TRIM3O75382 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM3O75382 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
TRIM3O75382 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM3O75382 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM3O75382 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM3O75382 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM3O75382 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.7■□□□□ 0.9
TRIM3O75382 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM3O75382 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM3O75382 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM3O75382 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.7■□□□□ 0.9
TRIM3O75382 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM3O75382 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM3O75382 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM3O75382 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM3O75382 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM3O75382 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
TRIM3O75382 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TRIM3O75382 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM3O75382 AC009102.2-201ENST00000606772 1639 ntBASIC20.69■□□□□ 0.9
TRIM3O75382 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
TRIM3O75382 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.69■□□□□ 0.9
TRIM3O75382 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM3O75382 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM3O75382 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
TRIM3O75382 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
TRIM3O75382 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM3O75382 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM3O75382 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms