Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LDB3O75112 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.09■□□□□ 0.97
LDB3O75112 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB3O75112 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB3O75112 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB3O75112 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LDB3O75112 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.09■□□□□ 0.97
LDB3O75112 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB3O75112 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.09■□□□□ 0.97
LDB3O75112 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB3O75112 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB3O75112 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
LDB3O75112 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
LDB3O75112 AC144652.1-201ENST00000609974 1624 ntBASIC21.08■□□□□ 0.97
LDB3O75112 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
LDB3O75112 AC092068.2-201ENST00000590491 1708 ntBASIC21.08■□□□□ 0.97
LDB3O75112 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.96
LDB3O75112 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.08■□□□□ 0.96
LDB3O75112 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
LDB3O75112 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
LDB3O75112 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
LDB3O75112 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.08■□□□□ 0.96
LDB3O75112 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LDB3O75112 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
LDB3O75112 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
LDB3O75112 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.07■□□□□ 0.96
LDB3O75112 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LDB3O75112 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.07■□□□□ 0.96
LDB3O75112 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LDB3O75112 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.07■□□□□ 0.96
LDB3O75112 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDB3O75112 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.06■□□□□ 0.96
LDB3O75112 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LDB3O75112 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LDB3O75112 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDB3O75112 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
LDB3O75112 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.06■□□□□ 0.96
LDB3O75112 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDB3O75112 AL136116.3-201ENST00000402907 1138 ntBASIC21.06■□□□□ 0.96
LDB3O75112 SRD5A1P1-201ENST00000442297 786 ntBASIC21.06■□□□□ 0.96
LDB3O75112 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
LDB3O75112 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDB3O75112 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDB3O75112 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.06■□□□□ 0.96
LDB3O75112 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDB3O75112 AC008406.3-201ENST00000620001 1374 ntBASIC21.06■□□□□ 0.96
LDB3O75112 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LDB3O75112 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LDB3O75112 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LDB3O75112 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.05■□□□□ 0.96
LDB3O75112 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LDB3O75112 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LDB3O75112 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LDB3O75112 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LDB3O75112 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.05■□□□□ 0.96
LDB3O75112 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LDB3O75112 AL353803.4-201ENST00000565882 1934 ntBASIC21.05■□□□□ 0.96
LDB3O75112 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LDB3O75112 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.05■□□□□ 0.96
LDB3O75112 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC21.04■□□□□ 0.96
LDB3O75112 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.04■□□□□ 0.96
LDB3O75112 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDB3O75112 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDB3O75112 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDB3O75112 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.04■□□□□ 0.96
LDB3O75112 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDB3O75112 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.04■□□□□ 0.96
LDB3O75112 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
LDB3O75112 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDB3O75112 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.04■□□□□ 0.96
LDB3O75112 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.04■□□□□ 0.96
LDB3O75112 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDB3O75112 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LDB3O75112 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.03■□□□□ 0.96
LDB3O75112 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LDB3O75112 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LDB3O75112 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.03■□□□□ 0.96
LDB3O75112 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LDB3O75112 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LDB3O75112 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
LDB3O75112 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
LDB3O75112 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
LDB3O75112 DUSP8P5-201ENST00000422884 1815 ntBASIC21.02■□□□□ 0.96
LDB3O75112 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LDB3O75112 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LDB3O75112 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LDB3O75112 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LDB3O75112 AC099791.2-201ENST00000605725 427 ntBASIC21.02■□□□□ 0.96
LDB3O75112 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.02■□□□□ 0.96
LDB3O75112 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LDB3O75112 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.02■□□□□ 0.96
LDB3O75112 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
LDB3O75112 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.95
LDB3O75112 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LDB3O75112 LINC01529-204ENST00000636474 1715 ntBASIC21.01■□□□□ 0.95
LDB3O75112 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
LDB3O75112 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LDB3O75112 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
LDB3O75112 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
LDB3O75112 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms