Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1BO60663 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.67■□□□□ 0.74
LMX1BO60663 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1BO60663 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LMX1BO60663 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.67■□□□□ 0.74
LMX1BO60663 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1BO60663 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1BO60663 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1BO60663 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
LMX1BO60663 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1BO60663 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.66■□□□□ 0.74
LMX1BO60663 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1BO60663 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1BO60663 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.66■□□□□ 0.74
LMX1BO60663 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
LMX1BO60663 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1BO60663 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC19.66■□□□□ 0.74
LMX1BO60663 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1BO60663 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1BO60663 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
LMX1BO60663 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1BO60663 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LMX1BO60663 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
LMX1BO60663 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LMX1BO60663 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LMX1BO60663 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
LMX1BO60663 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LMX1BO60663 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.65■□□□□ 0.74
LMX1BO60663 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LMX1BO60663 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
LMX1BO60663 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LMX1BO60663 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LMX1BO60663 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LMX1BO60663 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LMX1BO60663 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LMX1BO60663 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1BO60663 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1BO60663 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1BO60663 AC131281.2-201ENST00000520478 145 ntBASIC19.64■□□□□ 0.73
LMX1BO60663 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.64■□□□□ 0.73
LMX1BO60663 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.64■□□□□ 0.73
LMX1BO60663 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1BO60663 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1BO60663 AL117328.2-201ENST00000624617 1940 ntBASIC19.64■□□□□ 0.73
LMX1BO60663 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1BO60663 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1BO60663 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1BO60663 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
LMX1BO60663 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LMX1BO60663 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LMX1BO60663 EP400NL-214ENST00000641289 2402 ntBASIC19.63■□□□□ 0.73
LMX1BO60663 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
LMX1BO60663 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LMX1BO60663 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LMX1BO60663 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LMX1BO60663 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
LMX1BO60663 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LMX1BO60663 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LMX1BO60663 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LMX1BO60663 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LMX1BO60663 AF131216.4-201ENST00000638924 1588 ntBASIC19.63■□□□□ 0.73
LMX1BO60663 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
LMX1BO60663 AL136116.3-201ENST00000402907 1138 ntBASIC19.63■□□□□ 0.73
LMX1BO60663 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.63■□□□□ 0.73
LMX1BO60663 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.63■□□□□ 0.73
LMX1BO60663 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC19.63■□□□□ 0.73
LMX1BO60663 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
LMX1BO60663 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.63■□□□□ 0.73
LMX1BO60663 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LMX1BO60663 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1BO60663 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1BO60663 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1BO60663 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
LMX1BO60663 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.62■□□□□ 0.73
LMX1BO60663 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.62■□□□□ 0.73
LMX1BO60663 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.62■□□□□ 0.73
LMX1BO60663 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1BO60663 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1BO60663 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1BO60663 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LMX1BO60663 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LMX1BO60663 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LMX1BO60663 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LMX1BO60663 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LMX1BO60663 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LMX1BO60663 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
LMX1BO60663 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC19.61■□□□□ 0.73
LMX1BO60663 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LMX1BO60663 AC010997.5-201ENST00000609182 354 ntBASIC19.61■□□□□ 0.73
LMX1BO60663 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.61■□□□□ 0.73
LMX1BO60663 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
LMX1BO60663 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LMX1BO60663 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LMX1BO60663 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
LMX1BO60663 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LMX1BO60663 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.6■□□□□ 0.73
LMX1BO60663 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LMX1BO60663 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC19.6■□□□□ 0.73
LMX1BO60663 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.6■□□□□ 0.73
LMX1BO60663 MIR4281-201ENST00000580852 62 ntBASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms