Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 PQLC1-204ENST00000466449 2887 ntTSL 215.49■□□□□ 0.075e-6■■□□□ 13
CDC40O60508 PQLC1-205ENST00000469369 593 ntTSL 412.61□□□□□ -0.395e-6■■□□□ 13
CDC40O60508 PQLC1-209ENST00000589000 558 ntTSL 410.63□□□□□ -0.715e-6■■□□□ 13
CDC40O60508 LASP1-203ENST00000433206 4023 ntTSL 2 BASIC10.23□□□□□ -0.776e-8■■□□□ 13
CDC40O60508 LASP1-204ENST00000435347 3492 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.816e-8■■□□□ 13
CDC40O60508 LASP1-201ENST00000318008 4109 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.846e-8■■□□□ 13
CDC40O60508 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.14e-7■■□□□ 13
CDC40O60508 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.14e-7■■□□□ 13
CDC40O60508 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.743e-6■■□□□ 13
CDC40O60508 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.513e-6■■□□□ 13
CDC40O60508 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.453e-6■■□□□ 13
CDC40O60508 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.123e-6■■□□□ 13
CDC40O60508 PPIF-205ENST00000498681 518 ntTSL 215.63■□□□□ 0.093e-6■■□□□ 13
CDC40O60508 PPIF-203ENST00000472580 761 ntTSL 515.63■□□□□ 0.093e-6■■□□□ 13
CDC40O60508 PPIF-202ENST00000448165 821 ntTSL 214.31□□□□□ -0.123e-6■■□□□ 13
CDC40O60508 ATXN1-202ENST00000436367 10587 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.852e-6■■□□□ 13
CDC40O60508 ATXN1-201ENST00000244769 10602 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -12e-6■■□□□ 13
CDC40O60508 ATXN1-204ENST00000473388 1569 ntTSL 1 (best)6.97□□□□□ -1.292e-6■■□□□ 13
CDC40O60508 ATXN1-207ENST00000483954 744 ntTSL 34.91□□□□□ -1.622e-6■■□□□ 13
CDC40O60508 NOTUM-203ENST00000477214 813 ntTSL 521.79■■□□□ 1.082e-7■■□□□ 13
CDC40O60508 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.742e-7■■□□□ 13
CDC40O60508 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.83■□□□□ 0.133e-12■■□□□ 12.9
CDC40O60508 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.133e-12■■□□□ 12.9
CDC40O60508 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.173e-12■■□□□ 12.9
CDC40O60508 HNF4A-207ENST00000609262 540 ntTSL 1 (best)16.35■□□□□ 0.211e-7■■□□□ 12.9
CDC40O60508 EEF1D-237ENST00000531281 813 ntTSL 215.84■□□□□ 0.131e-9■■□□□ 12.9
CDC40O60508 EEF1D-239ENST00000531670 926 ntTSL 314.39□□□□□ -0.111e-9■■□□□ 12.9
CDC40O60508 RER1-201ENST00000306256 695 ntTSL 519.09■□□□□ 0.655e-7■■□□□ 12.9
CDC40O60508 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.3■□□□□ 0.525e-7■■□□□ 12.9
CDC40O60508 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.56■□□□□ 0.085e-7■■□□□ 12.9
CDC40O60508 RER1-208ENST00000493207 686 ntTSL 215.39■□□□□ 0.055e-7■■□□□ 12.9
CDC40O60508 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.97□□□□□ -0.175e-7■■□□□ 12.9
CDC40O60508 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.175e-7■■□□□ 12.9
CDC40O60508 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.212e-10■■□□□ 12.8
CDC40O60508 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.06■□□□□ 0.162e-10■■□□□ 12.8
CDC40O60508 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.98□□□□□ -0.012e-10■■□□□ 12.8
CDC40O60508 RAB17-202ENST00000392001 1792 ntTSL 1 (best)14.09□□□□□ -0.152e-10■■□□□ 12.8
CDC40O60508 RAB17-206ENST00000414278 1511 ntTSL 213.95□□□□□ -0.182e-10■■□□□ 12.8
CDC40O60508 RAB17-205ENST00000411462 663 ntTSL 213.88□□□□□ -0.192e-10■■□□□ 12.8
CDC40O60508 RAB17-210ENST00000477149 3211 ntTSL 1 (best)12.17□□□□□ -0.462e-10■■□□□ 12.8
CDC40O60508 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.263e-6■■□□□ 12.8
CDC40O60508 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.413e-6■■□□□ 12.8
CDC40O60508 RPS7-205ENST00000462576 907 ntTSL 1 (best)24.55■■□□□ 1.528e-9■■□□□ 12.8
CDC40O60508 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.88e-9■■□□□ 12.8
CDC40O60508 PRDM16-204ENST00000463591 384 ntTSL 518.86■□□□□ 0.618e-9■■□□□ 12.8
CDC40O60508 MLLT6-209ENST00000620482 1556 ntTSL 1 (best)16.6■□□□□ 0.255e-7■■□□□ 12.8
CDC40O60508 RPS7-208ENST00000481006 5429 ntTSL 1 (best)15.42■□□□□ 0.068e-9■■□□□ 12.8
CDC40O60508 ANKLE2-207ENST00000539605 10890 ntTSL 1 (best)15.4■□□□□ 0.068e-9■■□□□ 12.8
CDC40O60508 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.045e-7■■□□□ 12.8
CDC40O60508 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.018e-9■■□□□ 12.8
CDC40O60508 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.055e-7■■□□□ 12.8
CDC40O60508 MLLT6-201ENST00000611305 483 ntTSL 214.34□□□□□ -0.115e-7■■□□□ 12.8
CDC40O60508 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.178e-9■■□□□ 12.8
CDC40O60508 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.268e-9■■□□□ 12.8
CDC40O60508 PRDM16-208ENST00000514189 4236 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.438e-9■■□□□ 12.8
CDC40O60508 RPS7-202ENST00000403564 764 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.488e-9■■□□□ 12.8
CDC40O60508 VIL1-203ENST00000419986 639 ntTSL 311.29□□□□□ -0.62e-14■■□□□ 12.8
CDC40O60508 PRDM16-207ENST00000512462 3723 ntTSL 1 (best)11.21□□□□□ -0.618e-9■■□□□ 12.8
CDC40O60508 VIL1-202ENST00000392114 1968 ntTSL 2 BASIC11.06□□□□□ -0.642e-14■■□□□ 12.8
CDC40O60508 VIL1-201ENST00000248444 6531 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.862e-14■■□□□ 12.8
CDC40O60508 RPS7-203ENST00000406376 704 ntAPPRIS P1 TSL 3 BASIC9.53□□□□□ -0.888e-9■■□□□ 12.8
CDC40O60508 MLLT6-203ENST00000614769 657 ntTSL 29.19□□□□□ -0.945e-7■■□□□ 12.8
CDC40O60508 ANKLE2-205ENST00000538591 886 ntTSL 38.11□□□□□ -1.118e-9■■□□□ 12.8
CDC40O60508 ANKLE2-211ENST00000545623 1288 ntTSL 37.28□□□□□ -1.248e-9■■□□□ 12.8
CDC40O60508 RPS7-206ENST00000472966 556 ntTSL 1 (best)6.82□□□□□ -1.328e-9■■□□□ 12.8
CDC40O60508 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.48e-9■■□□□ 12.8
CDC40O60508 ANKLE2-204ENST00000535036 741 ntTSL 56.24□□□□□ -1.418e-9■■□□□ 12.8
CDC40O60508 BCAR1-218ENST00000566982 3024 ntTSL 213.8□□□□□ -0.22e-6■■□□□ 12.8
CDC40O60508 SNRNP70-203ENST00000544278 3221 ntTSL 1 (best)14.43□□□□□ -0.15e-8■■□□□ 12.7
CDC40O60508 TCF25-207ENST00000562256 1879 ntTSL 1 (best)16.64■□□□□ 0.253e-8■■□□□ 12.7
CDC40O60508 TCF25-204ENST00000561958 763 ntTSL 315.62■□□□□ 0.093e-8■■□□□ 12.7
CDC40O60508 TCF25-222ENST00000568412 797 ntTSL 315.62■□□□□ 0.093e-8■■□□□ 12.7
CDC40O60508 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.53□□□□□ -0.083e-8■■□□□ 12.7
CDC40O60508 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.093e-8■■□□□ 12.7
CDC40O60508 TCF25-226ENST00000640279 2688 ntTSL 514.35□□□□□ -0.113e-8■■□□□ 12.7
CDC40O60508 TCF25-223ENST00000568870 263 ntTSL 212.66□□□□□ -0.383e-8■■□□□ 12.7
CDC40O60508 TCF25-221ENST00000568409 857 ntTSL 312.66□□□□□ -0.383e-8■■□□□ 12.7
CDC40O60508 TCF25-219ENST00000566751 383 ntTSL 57.64□□□□□ -1.193e-8■■□□□ 12.7
CDC40O60508 SRRM2-218ENST00000574331 1759 ntTSL 216.07■□□□□ 0.161e-20■■□□□ 12.7
CDC40O60508 EIF4G1-224ENST00000444861 2384 ntTSL 1 (best)20.13■□□□□ 0.811e-10■■□□□ 12.7
CDC40O60508 EIF4G1-226ENST00000450424 2658 ntTSL 516.55■□□□□ 0.241e-10■■□□□ 12.7
CDC40O60508 EIF4G1-208ENST00000413967 2808 ntTSL 215.4■□□□□ 0.061e-10■■□□□ 12.7
CDC40O60508 EIF4G1-210ENST00000421110 2755 ntTSL 514.98□□□□□ -0.011e-10■■□□□ 12.7
CDC40O60508 EIF4G1-234ENST00000478291 564 ntTSL 214.46□□□□□ -0.091e-10■■□□□ 12.7
CDC40O60508 EIF4G1-213ENST00000426123 2907 ntTSL 214.01□□□□□ -0.171e-10■■□□□ 12.7
CDC40O60508 LAMA5-213ENST00000497053 723 ntTSL 313.57□□□□□ -0.241e-10■■□□□ 12.7
CDC40O60508 EIF4G1-231ENST00000464548 637 ntTSL 511.44□□□□□ -0.581e-10■■□□□ 12.7
CDC40O60508 EIF4G1-211ENST00000422614 750 ntTSL 59.58□□□□□ -0.881e-10■■□□□ 12.7
CDC40O60508 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.65■□□□□ 0.96e-8■■□□□ 12.6
CDC40O60508 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.446e-8■■□□□ 12.6
CDC40O60508 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.74■■□□□ 1.076e-6■■□□□ 12.6
CDC40O60508 ARRB2-214ENST00000574502 709 ntTSL 321.51■■□□□ 1.036e-6■■□□□ 12.6
CDC40O60508 EPS8L2-222ENST00000532545 419 ntTSL 320.95■□□□□ 0.944e-11■■□□□ 12.6
CDC40O60508 EPS8L2-213ENST00000529346 1718 ntTSL 220.5■□□□□ 0.874e-11■■□□□ 12.6
CDC40O60508 ARRB2-215ENST00000574888 509 ntTSL 419.63■□□□□ 0.736e-6■■□□□ 12.6
CDC40O60508 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.686e-6■■□□□ 12.6
CDC40O60508 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.616e-6■■□□□ 12.6
CDC40O60508 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.74■□□□□ 0.596e-6■■□□□ 12.6
CDC40O60508 EPS8L2-225ENST00000533816 540 ntTSL 518.65■□□□□ 0.584e-11■■□□□ 12.6
CDC40O60508 ARRB2-206ENST00000570739 553 ntTSL 418.46■□□□□ 0.556e-6■■□□□ 12.6
Retrieved 100 of 5,364 protein–RNA pairs in 48.1 ms