RNA–Protein interactions for RNA: ENST00000512462.5

PRDM16-207, Transcript of PR/SET domain 16, humanhuman

TSL 1 (best)

Gene PRDM16, Length 3,723 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM16-207ENST00000512462 NISCHQ9Y2I1 1504 aa23.52■■□□□ 1.36
PRDM16-207ENST00000512462 DCAF8L2P0C7V8 631 aa21.6■■□□□ 1.05
PRDM16-207ENST00000512462 SHROOM4Q9ULL8 1493 aa21.1■□□□□ 0.97
PRDM16-207ENST00000512462 SUPT5HO00267 1087 aaKnown RBP20.95■□□□□ 0.95
PRDM16-207ENST00000512462 CCDC180Q9P1Z9 1646 aa20.21■□□□□ 0.83
PRDM16-207ENST00000512462 EHMT2Q96KQ7 1210 aa20.14■□□□□ 0.82
PRDM16-207ENST00000512462 ZCCHC6Q5VYS8 1495 aaKnown RBP19.85■□□□□ 0.77
PRDM16-207ENST00000512462 FAM9AQ8IZU1 332 aaPredicted RBP19.69■□□□□ 0.74
PRDM16-207ENST00000512462 PCGF6Q9BYE7 350 aa19.47■□□□□ 0.71
PRDM16-207ENST00000512462 DCAF1Q9Y4B6 1507 aa19.38■□□□□ 0.69
PRDM16-207ENST00000512462 TTBK1Q5TCY1 1321 aaPredicted RBP19.36■□□□□ 0.69
PRDM16-207ENST00000512462 LOC105371045A0A1W2PR82 267 aa19.25■□□□□ 0.67
PRDM16-207ENST00000512462 CHIC1Q5VXU3 224 aa19.22■□□□□ 0.67
PRDM16-207ENST00000512462 TRIM41Q8WV44 630 aa19.16■□□□□ 0.66
PRDM16-207ENST00000512462 PPARGC1BQ86YN6 1023 aaKnown RBP19.15■□□□□ 0.66
PRDM16-207ENST00000512462 RANGAP1P46060 587 aaPredicted RBP19.05■□□□□ 0.64
PRDM16-207ENST00000512462 ABCC9O60706 1549 aa18.99■□□□□ 0.63
PRDM16-207ENST00000512462 MYO15BQ96JP2 1530 aa18.95■□□□□ 0.62
PRDM16-207ENST00000512462 SCRIBQ14160 1630 aa18.77■□□□□ 0.6
PRDM16-207ENST00000512462 PABPN1Q86U42 306 aaKnown RBP eCLIP18.74■□□□□ 0.59
PRDM16-207ENST00000512462 NACADO15069 1562 aa18.72■□□□□ 0.59
PRDM16-207ENST00000512462 UBTFP17480 764 aaKnown RBP18.67■□□□□ 0.58
PRDM16-207ENST00000512462 HRCP23327 699 aa18.58■□□□□ 0.56
PRDM16-207ENST00000512462 PELP1Q8IZL8 1130 aaKnown RBP18.57■□□□□ 0.56
PRDM16-207ENST00000512462 CCER1Q8TC90 406 aaPredicted RBP18.51■□□□□ 0.55
PRDM16-207ENST00000512462 APLP2Q06481 763 aa18.5■□□□□ 0.55
PRDM16-207ENST00000512462 TRIM26Q12899 539 aaPredicted RBP18.48■□□□□ 0.55
PRDM16-207ENST00000512462 RSF1Q96T23 1441 aaPredicted RBP18.46■□□□□ 0.55
PRDM16-207ENST00000512462 RB1CC1Q8TDY2 1594 aa18.46■□□□□ 0.55
PRDM16-207ENST00000512462 ATP1B4Q9UN42 357 aaPredicted RBP18.37■□□□□ 0.53
PRDM16-207ENST00000512462 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.32■□□□□ 0.52
PRDM16-207ENST00000512462 CECR2Q9BXF3 1484 aa18.3■□□□□ 0.52
PRDM16-207ENST00000512462 MROH2BQ7Z745 1585 aa18.23■□□□□ 0.51
PRDM16-207ENST00000512462 HNRNPUL2Q1KMD3 747 aaKnown RBP18.23■□□□□ 0.51
PRDM16-207ENST00000512462 ITGAEP38570 1179 aa18.18■□□□□ 0.5
PRDM16-207ENST00000512462 UNC13AQ9UPW8 1703 aa18.18■□□□□ 0.5
PRDM16-207ENST00000512462 YTHDC1Q96MU7 727 aaKnown RBP18.13■□□□□ 0.49
PRDM16-207ENST00000512462 WIZO95785 1651 aa18.12■□□□□ 0.49
PRDM16-207ENST00000512462 ZEB1P37275 1124 aaPredicted RBP18.11■□□□□ 0.49
PRDM16-207ENST00000512462 BAZ1AQ9NRL2 1556 aaPredicted RBP18.09■□□□□ 0.49
PRDM16-207ENST00000512462 MYT1Q01538 1121 aa18.09■□□□□ 0.49
PRDM16-207ENST00000512462 SMARCA4P51532 1647 aa17.98■□□□□ 0.47
PRDM16-207ENST00000512462 BICRAQ9NZM4 1560 aa17.96■□□□□ 0.47
PRDM16-207ENST00000512462 TOP2AP11388 1531 aaKnown RBP17.88■□□□□ 0.45
PRDM16-207ENST00000512462 CSRNP3Q8WYN3 585 aa17.86■□□□□ 0.45
PRDM16-207ENST00000512462 EIF4G1Q04637 1599 aaKnown RBP17.82■□□□□ 0.44
PRDM16-207ENST00000512462 P3H3Q8IVL6 736 aa17.77■□□□□ 0.44
PRDM16-207ENST00000512462 SMARCA2P51531 1590 aa17.76■□□□□ 0.43
PRDM16-207ENST00000512462 CCDC88BA6NC98 1476 aa17.75■□□□□ 0.43
PRDM16-207ENST00000512462 CENPBP07199 599 aaPredicted RBP17.71■□□□□ 0.43
PRDM16-207ENST00000512462 PEG3Q9GZU2 1588 aa17.7■□□□□ 0.42
PRDM16-207ENST00000512462 DIEXFQ68CQ4 756 aaKnown RBP17.69■□□□□ 0.42
PRDM16-207ENST00000512462 ARID3CA6NKF2 412 aa17.64■□□□□ 0.41
PRDM16-207ENST00000512462 CNGB1Q14028 1251 aaPredicted RBP17.62■□□□□ 0.41
PRDM16-207ENST00000512462 FAM50AQ14320 339 aaKnown RBP17.62■□□□□ 0.41
PRDM16-207ENST00000512462 ABCC8Q09428 1581 aa17.58■□□□□ 0.4
PRDM16-207ENST00000512462 ATAD2BQ9ULI0 1458 aa17.57■□□□□ 0.4
PRDM16-207ENST00000512462 NEUROD1Q13562 356 aa17.54■□□□□ 0.4
PRDM16-207ENST00000512462 SOGA1O94964 1423 aa17.51■□□□□ 0.39
PRDM16-207ENST00000512462 SCAF1Q9H7N4 1312 aaKnown RBP17.5■□□□□ 0.39
PRDM16-207ENST00000512462 BAZ1BQ9UIG0 1483 aaKnown RBP17.49■□□□□ 0.39
PRDM16-207ENST00000512462 POLR3GLQ9BT43 218 aa17.42■□□□□ 0.38
PRDM16-207ENST00000512462 CEP162Q5TB80 1403 aa17.42■□□□□ 0.38
PRDM16-207ENST00000512462 FBLN2P98095 1184 aa17.38■□□□□ 0.37
PRDM16-207ENST00000512462 GTF3C3Q9Y5Q9 886 aa17.37■□□□□ 0.37
PRDM16-207ENST00000512462 WRNQ14191 1432 aaPredicted RBP eCLIP17.36■□□□□ 0.37
PRDM16-207ENST00000512462 ZNF316A6NFI3 1004 aaPredicted RBP17.33■□□□□ 0.37
PRDM16-207ENST00000512462 CLIP1P30622 1438 aa17.31■□□□□ 0.36
PRDM16-207ENST00000512462 HMGXB3Q12766 1538 aa17.31■□□□□ 0.36
PRDM16-207ENST00000512462 NCAPD3P42695 1498 aa17.3■□□□□ 0.36
PRDM16-207ENST00000512462 EEA1Q15075 1411 aa17.29■□□□□ 0.36
PRDM16-207ENST00000512462 SYNJ1O43426 1573 aa17.29■□□□□ 0.36
PRDM16-207ENST00000512462 RUSC2Q8N2Y8 1516 aa17.28■□□□□ 0.36
PRDM16-207ENST00000512462 TRIM52Q96A61 297 aa17.26■□□□□ 0.35
PRDM16-207ENST00000512462 HIRIP3Q9BW71 556 aaPredicted RBP17.25■□□□□ 0.35
PRDM16-207ENST00000512462 BCANQ96GW7 911 aa17.19■□□□□ 0.34
PRDM16-207ENST00000512462 GOLGA3Q08378 1498 aa17.17■□□□□ 0.34
PRDM16-207ENST00000512462 TNIKQ9UKE5 1360 aa17.17■□□□□ 0.34
PRDM16-207ENST00000512462 ACIN1Q9UKV3 1341 aaKnown RBP17.16■□□□□ 0.34
PRDM16-207ENST00000512462 ZNF326Q5BKZ1 582 aaKnown RBP17.16■□□□□ 0.34
PRDM16-207ENST00000512462 CHIC2Q9UKJ5 165 aa17.15■□□□□ 0.34
PRDM16-207ENST00000512462 MIER1Q8N108 512 aa17.14■□□□□ 0.33
PRDM16-207ENST00000512462 TOP2BQ02880 1626 aa17.13■□□□□ 0.33
PRDM16-207ENST00000512462 MYT1LQ9UL68 1186 aa17.12■□□□□ 0.33
PRDM16-207ENST00000512462 BIVM-ERCC5R4GMW8 1640 aa17.1■□□□□ 0.33
PRDM16-207ENST00000512462 KANK4Q5T7N3 995 aaPredicted RBP17.09■□□□□ 0.33
PRDM16-207ENST00000512462 ZNF777Q9ULD5 760 aaPredicted RBP17.09■□□□□ 0.33
PRDM16-207ENST00000512462 PRKCSHP14314 528 aaPredicted RBP17.09■□□□□ 0.33
PRDM16-207ENST00000512462 KIF21BO75037 1637 aa17.08■□□□□ 0.32
PRDM16-207ENST00000512462 CFTRP13569 1480 aa17.07■□□□□ 0.32
PRDM16-207ENST00000512462 NEFLP07196 543 aa17.07■□□□□ 0.32
PRDM16-207ENST00000512462 CEP164Q9UPV0 1460 aa17.07■□□□□ 0.32
PRDM16-207ENST00000512462 BCL11AQ9H165 835 aa17.05■□□□□ 0.32
PRDM16-207ENST00000512462 DDX10Q13206 875 aaKnown RBP17.05■□□□□ 0.32
PRDM16-207ENST00000512462 CUX1P39880 1505 aa17.01■□□□□ 0.31
PRDM16-207ENST00000512462 CC2D2AQ9P2K1 1620 aa17■□□□□ 0.31
PRDM16-207ENST00000512462 PRDM2Q13029 1718 aa16.98■□□□□ 0.31
PRDM16-207ENST00000512462 SIN3AQ96ST3 1273 aa16.97■□□□□ 0.31
PRDM16-207ENST00000512462 RAPGEF2Q9Y4G8 1499 aa16.95■□□□□ 0.3
PRDM16-207ENST00000512462 RRP7BPQ9NSQ0 103 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms