Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.89■□□□□ 0.93
HMGN4O00479 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGN4O00479 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGN4O00479 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.88■□□□□ 0.93
HMGN4O00479 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGN4O00479 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HMGN4O00479 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.88■□□□□ 0.93
HMGN4O00479 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HMGN4O00479 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.87■□□□□ 0.93
HMGN4O00479 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HMGN4O00479 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HMGN4O00479 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HMGN4O00479 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HMGN4O00479 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.87■□□□□ 0.93
HMGN4O00479 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGN4O00479 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
HMGN4O00479 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
HMGN4O00479 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.86■□□□□ 0.93
HMGN4O00479 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
HMGN4O00479 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGN4O00479 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HMGN4O00479 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
HMGN4O00479 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HMGN4O00479 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
HMGN4O00479 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGN4O00479 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGN4O00479 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.85■□□□□ 0.93
HMGN4O00479 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HMGN4O00479 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.85■□□□□ 0.93
HMGN4O00479 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGN4O00479 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.85■□□□□ 0.93
HMGN4O00479 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGN4O00479 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.85■□□□□ 0.93
HMGN4O00479 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HMGN4O00479 AC144652.1-201ENST00000609974 1624 ntBASIC20.85■□□□□ 0.93
HMGN4O00479 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HMGN4O00479 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HMGN4O00479 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGN4O00479 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGN4O00479 AC005703.6-201ENST00000623265 1329 ntBASIC20.84■□□□□ 0.93
HMGN4O00479 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGN4O00479 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGN4O00479 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
HMGN4O00479 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGN4O00479 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGN4O00479 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.84■□□□□ 0.93
HMGN4O00479 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
HMGN4O00479 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
HMGN4O00479 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
HMGN4O00479 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.84■□□□□ 0.93
HMGN4O00479 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.83■□□□□ 0.93
HMGN4O00479 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HMGN4O00479 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.83■□□□□ 0.93
HMGN4O00479 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.83■□□□□ 0.93
HMGN4O00479 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HMGN4O00479 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
HMGN4O00479 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.83■□□□□ 0.92
HMGN4O00479 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
HMGN4O00479 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.82■□□□□ 0.92
HMGN4O00479 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.82■□□□□ 0.92
HMGN4O00479 RARRES2P1-201ENST00000474487 481 ntBASIC20.82■□□□□ 0.92
HMGN4O00479 AC092028.1-203ENST00000608262 953 ntBASIC20.82■□□□□ 0.92
HMGN4O00479 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.82■□□□□ 0.92
HMGN4O00479 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.82■□□□□ 0.92
HMGN4O00479 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HMGN4O00479 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGN4O00479 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
HMGN4O00479 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGN4O00479 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGN4O00479 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGN4O00479 GUSBP5-202ENST00000510805 1989 ntBASIC20.81■□□□□ 0.92
HMGN4O00479 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.81■□□□□ 0.92
HMGN4O00479 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.81■□□□□ 0.92
HMGN4O00479 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGN4O00479 EP400NL-214ENST00000641289 2402 ntBASIC20.81■□□□□ 0.92
HMGN4O00479 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
HMGN4O00479 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.81■□□□□ 0.92
HMGN4O00479 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGN4O00479 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.81■□□□□ 0.92
HMGN4O00479 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
HMGN4O00479 Z92544.1-202ENST00000571933 1220 ntBASIC20.81■□□□□ 0.92
HMGN4O00479 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGN4O00479 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGN4O00479 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
HMGN4O00479 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
HMGN4O00479 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
HMGN4O00479 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGN4O00479 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.8■□□□□ 0.92
HMGN4O00479 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGN4O00479 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HMGN4O00479 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HMGN4O00479 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HMGN4O00479 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
HMGN4O00479 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGN4O00479 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.8■□□□□ 0.92
HMGN4O00479 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
HMGN4O00479 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGN4O00479 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.8■□□□□ 0.92
HMGN4O00479 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGN4O00479 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms