Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.26
CBX4O00257 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CBX4O00257 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CBX4O00257 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.89■■□□□ 1.25
CBX4O00257 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
CBX4O00257 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CBX4O00257 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC22.89■■□□□ 1.25
CBX4O00257 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.25
CBX4O00257 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CBX4O00257 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
CBX4O00257 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
CBX4O00257 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CBX4O00257 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CBX4O00257 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
CBX4O00257 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
CBX4O00257 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.88■■□□□ 1.25
CBX4O00257 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CBX4O00257 AL136162.1-201ENST00000607711 1078 ntBASIC22.88■■□□□ 1.25
CBX4O00257 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
CBX4O00257 AC144652.1-201ENST00000609974 1624 ntBASIC22.88■■□□□ 1.25
CBX4O00257 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CBX4O00257 H19-210ENST00000439725 1929 ntTSL 2 BASIC22.88■■□□□ 1.25
CBX4O00257 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CBX4O00257 AC079630.1-202ENST00000618127 1840 ntBASIC22.87■■□□□ 1.25
CBX4O00257 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CBX4O00257 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CBX4O00257 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
CBX4O00257 PBX2P1-201ENST00000493219 1291 ntBASIC22.87■■□□□ 1.25
CBX4O00257 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CBX4O00257 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
CBX4O00257 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
CBX4O00257 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CBX4O00257 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CBX4O00257 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CBX4O00257 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CBX4O00257 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
CBX4O00257 SERBP1P1-201ENST00000396021 1160 ntBASIC22.86■■□□□ 1.25
CBX4O00257 PTCHD3P2-201ENST00000424937 1205 ntBASIC22.86■■□□□ 1.25
CBX4O00257 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CBX4O00257 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
CBX4O00257 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
CBX4O00257 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC22.86■■□□□ 1.25
CBX4O00257 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.86■■□□□ 1.25
CBX4O00257 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CBX4O00257 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CBX4O00257 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CBX4O00257 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CBX4O00257 GUK1-205ENST00000366722 850 ntTSL 3 BASIC22.85■■□□□ 1.25
CBX4O00257 SF1-220ENST00000626028 704 ntTSL 2 BASIC22.85■■□□□ 1.25
CBX4O00257 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC22.85■■□□□ 1.25
CBX4O00257 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CBX4O00257 FP325331.1-202ENST00000623531 1380 ntBASIC22.85■■□□□ 1.25
CBX4O00257 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.84■■□□□ 1.25
CBX4O00257 AC135279.3-201ENST00000610945 1311 ntBASIC22.84■■□□□ 1.25
CBX4O00257 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CBX4O00257 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CBX4O00257 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC22.84■■□□□ 1.25
CBX4O00257 ZNRF2P3-201ENST00000424200 374 ntBASIC22.84■■□□□ 1.25
CBX4O00257 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.84■■□□□ 1.25
CBX4O00257 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC22.84■■□□□ 1.25
CBX4O00257 AC024257.2-201ENST00000549699 147 ntBASIC22.84■■□□□ 1.25
CBX4O00257 LINC01529-204ENST00000636474 1715 ntBASIC22.84■■□□□ 1.25
CBX4O00257 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC22.84■■□□□ 1.25
CBX4O00257 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CBX4O00257 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CBX4O00257 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
CBX4O00257 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC22.83■■□□□ 1.25
CBX4O00257 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC22.83■■□□□ 1.25
CBX4O00257 MIR3181-201ENST00000578512 73 ntBASIC22.83■■□□□ 1.25
CBX4O00257 AC106739.1-201ENST00000617035 715 ntBASIC22.83■■□□□ 1.25
CBX4O00257 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.83■■□□□ 1.25
CBX4O00257 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.25
CBX4O00257 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
CBX4O00257 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CBX4O00257 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CBX4O00257 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC22.82■■□□□ 1.24
CBX4O00257 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.82■■□□□ 1.24
CBX4O00257 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CBX4O00257 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
CBX4O00257 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC22.82■■□□□ 1.24
CBX4O00257 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC22.82■■□□□ 1.24
CBX4O00257 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.82■■□□□ 1.24
CBX4O00257 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
CBX4O00257 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CBX4O00257 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
CBX4O00257 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
CBX4O00257 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CBX4O00257 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.82■■□□□ 1.24
CBX4O00257 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC22.81■■□□□ 1.24
CBX4O00257 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
CBX4O00257 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
CBX4O00257 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22.81■■□□□ 1.24
CBX4O00257 AC133561.4-201ENST00000566112 224 ntBASIC22.81■■□□□ 1.24
CBX4O00257 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC22.81■■□□□ 1.24
CBX4O00257 pRNA.6-201ENST00000610482 90 ntBASIC22.81■■□□□ 1.24
CBX4O00257 pRNA.5-201ENST00000612139 90 ntBASIC22.81■■□□□ 1.24
CBX4O00257 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
CBX4O00257 pRNA.11-201ENST00000618423 90 ntBASIC22.81■■□□□ 1.24
CBX4O00257 pRNA.13-201ENST00000619112 90 ntBASIC22.81■■□□□ 1.24
CBX4O00257 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms