Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
TMEM56-RWDD3S4R434 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
TMEM56-RWDD3S4R434 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC22.85■■□□□ 1.25
TMEM56-RWDD3S4R434 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
TMEM56-RWDD3S4R434 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
TMEM56-RWDD3S4R434 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
TMEM56-RWDD3S4R434 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC22.82■■□□□ 1.24
TMEM56-RWDD3S4R434 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
TMEM56-RWDD3S4R434 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
TMEM56-RWDD3S4R434 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC22.8■■□□□ 1.24
TMEM56-RWDD3S4R434 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
TMEM56-RWDD3S4R434 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
TMEM56-RWDD3S4R434 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
TMEM56-RWDD3S4R434 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC22.78■■□□□ 1.24
TMEM56-RWDD3S4R434 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
TMEM56-RWDD3S4R434 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
TMEM56-RWDD3S4R434 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
TMEM56-RWDD3S4R434 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC22.74■■□□□ 1.23
TMEM56-RWDD3S4R434 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC22.74■■□□□ 1.23
TMEM56-RWDD3S4R434 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC22.74■■□□□ 1.23
TMEM56-RWDD3S4R434 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
TMEM56-RWDD3S4R434 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
TMEM56-RWDD3S4R434 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
TMEM56-RWDD3S4R434 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
TMEM56-RWDD3S4R434 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TMEM56-RWDD3S4R434 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TMEM56-RWDD3S4R434 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
TMEM56-RWDD3S4R434 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
TMEM56-RWDD3S4R434 AC120057.4-201ENST00000624722 1615 ntBASIC22.66■■□□□ 1.22
TMEM56-RWDD3S4R434 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TMEM56-RWDD3S4R434 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
TMEM56-RWDD3S4R434 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TMEM56-RWDD3S4R434 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC22.65■■□□□ 1.22
TMEM56-RWDD3S4R434 ABCB10P1-201ENST00000614297 2181 ntBASIC22.65■■□□□ 1.22
TMEM56-RWDD3S4R434 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC22.65■■□□□ 1.22
TMEM56-RWDD3S4R434 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TMEM56-RWDD3S4R434 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
TMEM56-RWDD3S4R434 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
TMEM56-RWDD3S4R434 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC22.63■■□□□ 1.21
TMEM56-RWDD3S4R434 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TMEM56-RWDD3S4R434 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TMEM56-RWDD3S4R434 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
TMEM56-RWDD3S4R434 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
TMEM56-RWDD3S4R434 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TMEM56-RWDD3S4R434 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TMEM56-RWDD3S4R434 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
TMEM56-RWDD3S4R434 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
TMEM56-RWDD3S4R434 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TMEM56-RWDD3S4R434 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC22.57■■□□□ 1.2
TMEM56-RWDD3S4R434 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TMEM56-RWDD3S4R434 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC22.56■■□□□ 1.2
TMEM56-RWDD3S4R434 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
TMEM56-RWDD3S4R434 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TMEM56-RWDD3S4R434 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TMEM56-RWDD3S4R434 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TMEM56-RWDD3S4R434 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
TMEM56-RWDD3S4R434 ABCB10P3-201ENST00000561950 2166 ntBASIC22.53■■□□□ 1.2
TMEM56-RWDD3S4R434 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC22.53■■□□□ 1.2
TMEM56-RWDD3S4R434 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC22.51■■□□□ 1.19
TMEM56-RWDD3S4R434 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TMEM56-RWDD3S4R434 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TMEM56-RWDD3S4R434 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
TMEM56-RWDD3S4R434 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
TMEM56-RWDD3S4R434 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC22.47■■□□□ 1.19
TMEM56-RWDD3S4R434 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TMEM56-RWDD3S4R434 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC22.47■■□□□ 1.19
TMEM56-RWDD3S4R434 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TMEM56-RWDD3S4R434 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TMEM56-RWDD3S4R434 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TMEM56-RWDD3S4R434 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TMEM56-RWDD3S4R434 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
TMEM56-RWDD3S4R434 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC22.43■■□□□ 1.18
TMEM56-RWDD3S4R434 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TMEM56-RWDD3S4R434 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC22.42■■□□□ 1.18
TMEM56-RWDD3S4R434 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
TMEM56-RWDD3S4R434 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
TMEM56-RWDD3S4R434 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
TMEM56-RWDD3S4R434 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC22.41■■□□□ 1.18
TMEM56-RWDD3S4R434 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TMEM56-RWDD3S4R434 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TMEM56-RWDD3S4R434 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
TMEM56-RWDD3S4R434 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC22.4■■□□□ 1.18
TMEM56-RWDD3S4R434 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC22.4■■□□□ 1.18
TMEM56-RWDD3S4R434 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
TMEM56-RWDD3S4R434 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
TMEM56-RWDD3S4R434 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC22.39■■□□□ 1.17
TMEM56-RWDD3S4R434 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC22.38■■□□□ 1.17
TMEM56-RWDD3S4R434 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TMEM56-RWDD3S4R434 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
TMEM56-RWDD3S4R434 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TMEM56-RWDD3S4R434 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TMEM56-RWDD3S4R434 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
TMEM56-RWDD3S4R434 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
TMEM56-RWDD3S4R434 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
TMEM56-RWDD3S4R434 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
TMEM56-RWDD3S4R434 SHF-206ENST00000560471 2499 ntTSL 5 BASIC22.32■■□□□ 1.16
TMEM56-RWDD3S4R434 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
TMEM56-RWDD3S4R434 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
TMEM56-RWDD3S4R434 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
TMEM56-RWDD3S4R434 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms