Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.368e-8■■■■■ 44.5
DDX55Q8NHQ9 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC26.07■■□□□ 1.768e-8■■■■■ 44.5
DDX55Q8NHQ9 BCL7C-203ENST00000572628 1603 ntTSL 1 (best)17.24■□□□□ 0.358e-8■■■■■ 44.5
DDX55Q8NHQ9 AC135048.2-201ENST00000572471 561 ntTSL 4 BASIC12.9□□□□□ -0.348e-8■■■■■ 44.5
DDX55Q8NHQ9 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.2■□□□□ 0.56e-8■■■■■ 44.5
DDX55Q8NHQ9 NAALADL1-209ENST00000528977 2385 ntTSL 1 (best)18.05■□□□□ 0.486e-8■■■■■ 44.5
DDX55Q8NHQ9 NAALADL1-210ENST00000529274 2427 ntTSL 1 (best)17.45■□□□□ 0.386e-8■■■■■ 44.5
DDX55Q8NHQ9 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.086e-8■■■■■ 44.5
DDX55Q8NHQ9 NAALADL1-217ENST00000532450 635 ntTSL 515.23■□□□□ 0.036e-8■■■■■ 44.5
DDX55Q8NHQ9 NAALADL1-220ENST00000533753 690 ntTSL 515.23■□□□□ 0.036e-8■■■■■ 44.5
DDX55Q8NHQ9 MAP3K10-207ENST00000597986 2104 ntTSL 525.72■■□□□ 1.717e-10■■■■■ 44.3
DDX55Q8NHQ9 C9orf16-204ENST00000492588 1570 ntTSL 520.51■□□□□ 0.875e-10■■■■■ 44.3
DDX55Q8NHQ9 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.565e-10■■■■■ 44.3
DDX55Q8NHQ9 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.257e-10■■■■■ 44.3
DDX55Q8NHQ9 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.187e-10■■■■■ 44.3
DDX55Q8NHQ9 C9orf16-202ENST00000486420 434 ntTSL 514.84□□□□□ -0.035e-10■■■■■ 44.3
DDX55Q8NHQ9 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC28.85■■■□□ 2.212e-7■■■■■ 43.8
DDX55Q8NHQ9 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.192e-7■■■■■ 43.8
DDX55Q8NHQ9 DCBLD1-210ENST00000533453 3584 ntTSL 1 (best)6.71□□□□□ -1.342e-7■■■■■ 43.8
DDX55Q8NHQ9 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.452e-9■■■■■ 43.6
DDX55Q8NHQ9 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.49■□□□□ 0.232e-9■■■■■ 43.6
DDX55Q8NHQ9 SCAP-202ENST00000320017 3430 ntTSL 215.95■□□□□ 0.142e-9■■■■■ 43.6
DDX55Q8NHQ9 SCAP-207ENST00000441517 3748 ntTSL 215.51■□□□□ 0.072e-9■■■■■ 43.6
DDX55Q8NHQ9 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.51■□□□□ 0.072e-9■■■■■ 43.6
DDX55Q8NHQ9 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.656e-8■■■■■ 43.5
DDX55Q8NHQ9 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.95■□□□□ 0.626e-8■■■■■ 43.5
DDX55Q8NHQ9 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC16.11■□□□□ 0.176e-8■■■■■ 43.5
DDX55Q8NHQ9 RNF121-207ENST00000526549 2375 ntTSL 215.92■□□□□ 0.146e-8■■■■■ 43.5
DDX55Q8NHQ9 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.32e-6■■■■■ 43.5
DDX55Q8NHQ9 EMD-207ENST00000486738 1284 ntTSL 321.16■□□□□ 0.989e-63■■■■■ 43.4
DDX55Q8NHQ9 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.376e-7■■■■■ 42.5
DDX55Q8NHQ9 CCNG2-203ENST00000497512 2051 ntTSL 1 (best)28.95■■■□□ 2.236e-7■■■■■ 42.5
DDX55Q8NHQ9 CXXC1-216ENST00000591474 845 ntTSL 328.32■■■□□ 2.126e-7■■■■■ 42.5
DDX55Q8NHQ9 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.816e-7■■■■■ 42.5
DDX55Q8NHQ9 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC26.05■■□□□ 1.766e-7■■■■■ 42.5
DDX55Q8NHQ9 MTX2-202ENST00000420864 1592 ntTSL 1 (best)25.79■■□□□ 1.726e-7■■■■■ 42.5
DDX55Q8NHQ9 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.71e-9■■■■■ 42.5
DDX55Q8NHQ9 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.686e-7■■■■■ 42.5
DDX55Q8NHQ9 CXXC1-204ENST00000586365 789 ntTSL 225.07■■□□□ 1.66e-7■■■■■ 42.5
DDX55Q8NHQ9 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC24.21■■□□□ 1.476e-7■■■■■ 42.5
DDX55Q8NHQ9 DONSON-203ENST00000417871 1820 ntTSL 524.19■■□□□ 1.466e-7■■■■■ 42.5
DDX55Q8NHQ9 CXXC1-207ENST00000586837 838 ntTSL 524.08■■□□□ 1.456e-7■■■■■ 42.5
DDX55Q8NHQ9 SNRNP25-201ENST00000293861 1905 ntAPPRIS ALT2 TSL 1 (best)23.92■■□□□ 1.421e-9■■■■■ 42.5
DDX55Q8NHQ9 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.396e-7■■■■■ 42.5
DDX55Q8NHQ9 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC23.75■■□□□ 1.396e-7■■■■■ 42.5
DDX55Q8NHQ9 CXXC1-210ENST00000587396 476 ntTSL 222.97■■□□□ 1.276e-7■■■■■ 42.5
DDX55Q8NHQ9 CXXC1-211ENST00000589548 849 ntTSL 322.78■■□□□ 1.246e-7■■■■■ 42.5
DDX55Q8NHQ9 CENPT-201ENST00000436104 1990 ntTSL 222.27■■□□□ 1.154e-10■■■■■ 42.5
DDX55Q8NHQ9 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.134e-10■■■■■ 42.5
DDX55Q8NHQ9 DONSON-211ENST00000457359 2273 ntTSL 521.85■■□□□ 1.096e-7■■■■■ 42.5
DDX55Q8NHQ9 CENPT-207ENST00000562513 1669 ntTSL 521.51■■□□□ 1.034e-10■■■■■ 42.5
DDX55Q8NHQ9 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.41■■□□□ 1.026e-7■■■■■ 42.5
DDX55Q8NHQ9 DOLPP1-201ENST00000327812 1932 ntTSL 1 (best)20.92■□□□□ 0.946e-7■■■■■ 42.5
DDX55Q8NHQ9 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.926e-7■■■■■ 42.5
DDX55Q8NHQ9 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.896e-7■■■■■ 42.5
DDX55Q8NHQ9 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.886e-9■■■■■ 42.5
DDX55Q8NHQ9 CENPT-210ENST00000563885 1931 ntTSL 520.3■□□□□ 0.844e-10■■■■■ 42.5
DDX55Q8NHQ9 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.781e-8■■■■■ 42.5
DDX55Q8NHQ9 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.94■□□□□ 0.786e-7■■■■■ 42.5
DDX55Q8NHQ9 TBL3-201ENST00000332704 2091 ntAPPRIS ALT2 TSL 1 (best)19.68■□□□□ 0.746e-7■■■■■ 42.5
DDX55Q8NHQ9 CXXC1-215ENST00000591190 1021 ntTSL 319.43■□□□□ 0.76e-7■■■■■ 42.5
DDX55Q8NHQ9 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.76e-7■■■■■ 42.5
DDX55Q8NHQ9 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.626e-7■■■■■ 42.5
DDX55Q8NHQ9 CSNK2B-205ENST00000465481 579 ntTSL 1 (best)18.72■□□□□ 0.596e-7■■■■■ 42.5
DDX55Q8NHQ9 HNF4A-203ENST00000372920 3340 ntTSL 1 (best)18.66■□□□□ 0.586e-7■■■■■ 42.5
DDX55Q8NHQ9 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.546e-7■■■■■ 42.5
DDX55Q8NHQ9 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.534e-10■■■■■ 42.5
DDX55Q8NHQ9 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.37■□□□□ 0.534e-10■■■■■ 42.5
DDX55Q8NHQ9 RNPEPL1-203ENST00000451363 538 ntTSL 418.21■□□□□ 0.516e-7■■■■■ 42.5
DDX55Q8NHQ9 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.2■□□□□ 0.56e-7■■■■■ 42.5
DDX55Q8NHQ9 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.486e-7■■■■■ 42.5
DDX55Q8NHQ9 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.446e-7■■■■■ 42.5
DDX55Q8NHQ9 SNRNP25-203ENST00000397876 831 ntTSL 317.8■□□□□ 0.441e-9■■■■■ 42.5
DDX55Q8NHQ9 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.426e-7■■■■■ 42.5
DDX55Q8NHQ9 BUB1B-PAK6-204ENST00000559435 608 ntTSL 517.57■□□□□ 0.46e-7■■■■■ 42.5
DDX55Q8NHQ9 TBL3-206ENST00000569628 2594 ntTSL 217.25■□□□□ 0.356e-7■■■■■ 42.5
DDX55Q8NHQ9 CENPT-234ENST00000574569 897 ntTSL 217.24■□□□□ 0.354e-10■■■■■ 42.5
DDX55Q8NHQ9 BUB1B-PAK6-202ENST00000453867 2490 ntTSL 217■□□□□ 0.316e-7■■■■■ 42.5
DDX55Q8NHQ9 CENPT-218ENST00000565157 2133 ntTSL 216.97■□□□□ 0.314e-10■■■■■ 42.5
DDX55Q8NHQ9 RNPEPL1-208ENST00000486058 3126 ntTSL 216.54■□□□□ 0.246e-7■■■■■ 42.5
DDX55Q8NHQ9 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.244e-10■■■■■ 42.5
DDX55Q8NHQ9 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.146e-7■■■■■ 42.5
DDX55Q8NHQ9 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC15.94■□□□□ 0.146e-7■■■■■ 42.5
DDX55Q8NHQ9 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.142e-7■■■■■ 42.5
DDX55Q8NHQ9 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC15.87■□□□□ 0.136e-7■■■■■ 42.5
DDX55Q8NHQ9 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC15.79■□□□□ 0.126e-7■■■■■ 42.5
DDX55Q8NHQ9 CSNK2B-206ENST00000468255 1792 ntTSL 515.61■□□□□ 0.096e-7■■■■■ 42.5
DDX55Q8NHQ9 CDCA3-210ENST00000545368 619 ntTSL 315.36■□□□□ 0.056e-7■■■■■ 42.5
DDX55Q8NHQ9 CENPT-227ENST00000568495 1098 ntTSL 515.04■□□□□ -04e-10■■■■■ 42.5
DDX55Q8NHQ9 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC14.97□□□□□ -0.012e-7■■■■■ 42.5
DDX55Q8NHQ9 TRIAP1-202ENST00000546954 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.021e-7■■■■■ 42.5
DDX55Q8NHQ9 SNRNP25-207ENST00000493672 329 ntTSL 514.88□□□□□ -0.031e-9■■■■■ 42.5
DDX55Q8NHQ9 HNF4A-204ENST00000415691 2302 ntTSL 1 (best) BASIC14.86□□□□□ -0.036e-7■■■■■ 42.5
DDX55Q8NHQ9 IFI30-203ENST00000600463 2116 ntTSL 214.78□□□□□ -0.046e-7■■■■■ 42.5
DDX55Q8NHQ9 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.056e-7■■■■■ 42.5
DDX55Q8NHQ9 BUB1B-PAK6-203ENST00000558658 2620 ntTSL 214.66□□□□□ -0.066e-7■■■■■ 42.5
DDX55Q8NHQ9 CSNK2B-208ENST00000481269 785 ntTSL 214.17□□□□□ -0.146e-7■■■■■ 42.5
DDX55Q8NHQ9 CENPT-233ENST00000569862 2957 ntTSL 214.03□□□□□ -0.164e-10■■■■■ 42.5
DDX55Q8NHQ9 CDCA3-203ENST00000446553 646 ntTSL 213.96□□□□□ -0.176e-7■■■■■ 42.5
DDX55Q8NHQ9 SNRNP25-206ENST00000481947 1260 ntTSL 513.9□□□□□ -0.186e-7■■■■■ 42.5
Retrieved 100 of 15,504 protein–RNA pairs in 642.2 ms