Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC26.44■■□□□ 1.82
PTPN6P29350 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
PTPN6P29350 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC26.44■■□□□ 1.82
PTPN6P29350 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
PTPN6P29350 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
PTPN6P29350 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC26.42■■□□□ 1.82
PTPN6P29350 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PTPN6P29350 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC26.42■■□□□ 1.82
PTPN6P29350 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PTPN6P29350 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
PTPN6P29350 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
PTPN6P29350 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
PTPN6P29350 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
PTPN6P29350 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PTPN6P29350 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC26.38■■□□□ 1.81
PTPN6P29350 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTPN6P29350 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC26.37■■□□□ 1.81
PTPN6P29350 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC26.35■■□□□ 1.81
PTPN6P29350 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PTPN6P29350 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC26.34■■□□□ 1.81
PTPN6P29350 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
PTPN6P29350 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
PTPN6P29350 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
PTPN6P29350 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTPN6P29350 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC26.3■■□□□ 1.8
PTPN6P29350 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
PTPN6P29350 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC26.29■■□□□ 1.8
PTPN6P29350 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PTPN6P29350 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC26.28■■□□□ 1.8
PTPN6P29350 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PTPN6P29350 DYNLL1-208ENST00000550178 581 ntBASIC26.27■■□□□ 1.8
PTPN6P29350 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PTPN6P29350 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PTPN6P29350 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
PTPN6P29350 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC26.26■■□□□ 1.79
PTPN6P29350 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.25■■□□□ 1.79
PTPN6P29350 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC26.24■■□□□ 1.79
PTPN6P29350 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.24■■□□□ 1.79
PTPN6P29350 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC26.23■■□□□ 1.79
PTPN6P29350 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PTPN6P29350 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
PTPN6P29350 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC26.22■■□□□ 1.79
PTPN6P29350 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PTPN6P29350 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PTPN6P29350 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC26.21■■□□□ 1.79
PTPN6P29350 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
PTPN6P29350 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC26.2■■□□□ 1.78
PTPN6P29350 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PTPN6P29350 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
PTPN6P29350 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
PTPN6P29350 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
PTPN6P29350 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC26.16■■□□□ 1.78
PTPN6P29350 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
PTPN6P29350 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC26.16■■□□□ 1.78
PTPN6P29350 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC26.16■■□□□ 1.78
PTPN6P29350 AC120057.4-201ENST00000624722 1615 ntBASIC26.16■■□□□ 1.78
PTPN6P29350 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
PTPN6P29350 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC26.14■■□□□ 1.77
PTPN6P29350 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.77
PTPN6P29350 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC26.12■■□□□ 1.77
PTPN6P29350 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC26.11■■□□□ 1.77
PTPN6P29350 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC26.1■■□□□ 1.77
PTPN6P29350 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC26.1■■□□□ 1.77
PTPN6P29350 AL031258.1-201ENST00000623562 325 ntBASIC26.09■■□□□ 1.77
PTPN6P29350 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PTPN6P29350 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
PTPN6P29350 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PTPN6P29350 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PTPN6P29350 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PTPN6P29350 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
PTPN6P29350 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
PTPN6P29350 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
PTPN6P29350 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTPN6P29350 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTPN6P29350 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC26.02■■□□□ 1.76
PTPN6P29350 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC26.02■■□□□ 1.76
PTPN6P29350 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC26.01■■□□□ 1.75
PTPN6P29350 MVK-208ENST00000539696 608 ntTSL 5 BASIC26.01■■□□□ 1.75
PTPN6P29350 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26■■□□□ 1.75
PTPN6P29350 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
PTPN6P29350 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
PTPN6P29350 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
PTPN6P29350 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.75
PTPN6P29350 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
PTPN6P29350 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
PTPN6P29350 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
PTPN6P29350 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC25.94■■□□□ 1.74
PTPN6P29350 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
PTPN6P29350 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
PTPN6P29350 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
PTPN6P29350 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
PTPN6P29350 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC25.91■■□□□ 1.74
PTPN6P29350 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC25.9■■□□□ 1.74
PTPN6P29350 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
PTPN6P29350 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.87■■□□□ 1.73
PTPN6P29350 ABCB10P1-201ENST00000614297 2181 ntBASIC25.87■■□□□ 1.73
PTPN6P29350 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
PTPN6P29350 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC25.85■■□□□ 1.73
PTPN6P29350 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PTPN6P29350 EBPL-203ENST00000378270 579 ntTSL 2 BASIC25.85■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms