Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
HMGN4O00479 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
HMGN4O00479 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC25.99■■□□□ 1.75
HMGN4O00479 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
HMGN4O00479 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
HMGN4O00479 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC25.98■■□□□ 1.75
HMGN4O00479 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC25.98■■□□□ 1.75
HMGN4O00479 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
HMGN4O00479 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC25.95■■□□□ 1.75
HMGN4O00479 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC25.94■■□□□ 1.74
HMGN4O00479 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC25.94■■□□□ 1.74
HMGN4O00479 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC25.94■■□□□ 1.74
HMGN4O00479 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC25.94■■□□□ 1.74
HMGN4O00479 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
HMGN4O00479 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
HMGN4O00479 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC25.93■■□□□ 1.74
HMGN4O00479 MVK-208ENST00000539696 608 ntTSL 5 BASIC25.92■■□□□ 1.74
HMGN4O00479 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
HMGN4O00479 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
HMGN4O00479 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
HMGN4O00479 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HMGN4O00479 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC25.87■■□□□ 1.73
HMGN4O00479 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
HMGN4O00479 DYNLL1-208ENST00000550178 581 ntBASIC25.86■■□□□ 1.73
HMGN4O00479 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC25.85■■□□□ 1.73
HMGN4O00479 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
HMGN4O00479 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
HMGN4O00479 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC25.84■■□□□ 1.73
HMGN4O00479 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
HMGN4O00479 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
HMGN4O00479 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC25.8■■□□□ 1.72
HMGN4O00479 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
HMGN4O00479 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
HMGN4O00479 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC25.8■■□□□ 1.72
HMGN4O00479 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
HMGN4O00479 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC25.79■■□□□ 1.72
HMGN4O00479 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
HMGN4O00479 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
HMGN4O00479 AC120057.4-201ENST00000624722 1615 ntBASIC25.77■■□□□ 1.72
HMGN4O00479 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
HMGN4O00479 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC25.76■■□□□ 1.72
HMGN4O00479 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
HMGN4O00479 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
HMGN4O00479 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
HMGN4O00479 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC25.74■■□□□ 1.71
HMGN4O00479 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
HMGN4O00479 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
HMGN4O00479 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC25.72■■□□□ 1.71
HMGN4O00479 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC25.71■■□□□ 1.71
HMGN4O00479 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
HMGN4O00479 AL031258.1-201ENST00000623562 325 ntBASIC25.7■■□□□ 1.7
HMGN4O00479 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC25.7■■□□□ 1.7
HMGN4O00479 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
HMGN4O00479 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
HMGN4O00479 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC25.69■■□□□ 1.7
HMGN4O00479 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC25.69■■□□□ 1.7
HMGN4O00479 EBPL-203ENST00000378270 579 ntTSL 2 BASIC25.68■■□□□ 1.7
HMGN4O00479 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
HMGN4O00479 AP002365.1-201ENST00000603448 772 ntBASIC25.67■■□□□ 1.7
HMGN4O00479 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
HMGN4O00479 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
HMGN4O00479 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC25.66■■□□□ 1.7
HMGN4O00479 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC25.65■■□□□ 1.7
HMGN4O00479 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC25.65■■□□□ 1.7
HMGN4O00479 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
HMGN4O00479 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
HMGN4O00479 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC25.63■■□□□ 1.69
HMGN4O00479 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC25.6■■□□□ 1.69
HMGN4O00479 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC25.59■■□□□ 1.69
HMGN4O00479 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.69
HMGN4O00479 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.68
HMGN4O00479 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
HMGN4O00479 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
HMGN4O00479 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
HMGN4O00479 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC25.53■■□□□ 1.68
HMGN4O00479 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
HMGN4O00479 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
HMGN4O00479 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
HMGN4O00479 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
HMGN4O00479 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
HMGN4O00479 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC25.49■■□□□ 1.67
HMGN4O00479 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
HMGN4O00479 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
HMGN4O00479 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
HMGN4O00479 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
HMGN4O00479 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
HMGN4O00479 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
HMGN4O00479 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
HMGN4O00479 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
HMGN4O00479 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.44■■□□□ 1.66
HMGN4O00479 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
HMGN4O00479 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
HMGN4O00479 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
HMGN4O00479 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
HMGN4O00479 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC25.41■■□□□ 1.66
HMGN4O00479 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC25.4■■□□□ 1.66
HMGN4O00479 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
HMGN4O00479 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
HMGN4O00479 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
HMGN4O00479 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC25.39■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms