Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 RPL3P2-204ENST00000413027 1203 ntBASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 KRT18P62-201ENST00000446618 1287 ntBASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 EEF1GP8-201ENST00000506566 1154 ntBASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 NHSL1-204ENST00000427025 7500 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 SH3PXD2A-203ENST00000369774 11468 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 SARS-202ENST00000369923 1882 ntTSL 5 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CTDP1Q9Y5B0 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 FAM90A21P-201ENST00000510875 1396 ntBASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 FAM90A15P-201ENST00000514465 1395 ntBASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 FAM90A6P-201ENST00000515148 1394 ntBASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 FAM90A16P-201ENST00000526662 1395 ntBASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 FAM90A9P-201ENST00000527940 1395 ntBASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 FAM90A5P-201ENST00000528738 1395 ntBASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 FAM90A14P-201ENST00000530386 1395 ntBASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 FAM90A13P-201ENST00000534703 1395 ntBASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 STK24P1-201ENST00000455035 1291 ntBASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 PCDHA5-203ENST00000614258 4248 ntBASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CTDP1Q9Y5B0 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 AL805961.2-201ENST00000642139 4817 ntBASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 ABCD1P4-201ENST00000399687 604 ntBASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC16.12■□□□□ 0.17
CTDP1Q9Y5B0 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms