Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC12.97□□□□□ -0.33
COL5A1P20908 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC12.97□□□□□ -0.33
COL5A1P20908 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
COL5A1P20908 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
COL5A1P20908 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL5A1P20908 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
COL5A1P20908 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL5A1P20908 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC12.96□□□□□ -0.33
COL5A1P20908 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL5A1P20908 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
COL5A1P20908 AL359845.1-201ENST00000458202 1648 ntBASIC12.96□□□□□ -0.33
COL5A1P20908 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC12.96□□□□□ -0.33
COL5A1P20908 SRL-202ENST00000537996 1814 ntTSL 2 BASIC12.96□□□□□ -0.33
COL5A1P20908 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL5A1P20908 CREB5-202ENST00000396298 2001 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL5A1P20908 GOLGA8G-203ENST00000525590 2009 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
COL5A1P20908 GOLGA8F-202ENST00000532622 2009 ntAPPRIS P5 TSL 5 BASIC12.96□□□□□ -0.33
COL5A1P20908 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC12.96□□□□□ -0.33
COL5A1P20908 AGAP10P-201ENST00000454844 2418 ntBASIC12.96□□□□□ -0.33
COL5A1P20908 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL5A1P20908 HAO1-201ENST00000378789 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL5A1P20908 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC12.96□□□□□ -0.33
COL5A1P20908 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL5A1P20908 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC12.96□□□□□ -0.33
COL5A1P20908 MARK2P9-201ENST00000430958 1727 ntBASIC12.96□□□□□ -0.33
COL5A1P20908 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL5A1P20908 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC12.96□□□□□ -0.33
COL5A1P20908 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL5A1P20908 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL5A1P20908 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
COL5A1P20908 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
COL5A1P20908 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC12.96□□□□□ -0.33
COL5A1P20908 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL5A1P20908 IQCF1-201ENST00000310914 695 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL5A1P20908 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL5A1P20908 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
COL5A1P20908 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC12.96□□□□□ -0.33
COL5A1P20908 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
COL5A1P20908 FAM126A-201ENST00000409763 616 ntTSL 2 BASIC12.96□□□□□ -0.33
COL5A1P20908 AP001331.1-201ENST00000413008 1015 ntBASIC12.96□□□□□ -0.33
COL5A1P20908 AL121994.1-201ENST00000413189 402 ntBASIC12.96□□□□□ -0.33
COL5A1P20908 RBMX2P5-201ENST00000424312 969 ntBASIC12.96□□□□□ -0.33
COL5A1P20908 RN7SL646P-201ENST00000492969 297 ntBASIC12.96□□□□□ -0.33
COL5A1P20908 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC12.96□□□□□ -0.33
COL5A1P20908 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC12.96□□□□□ -0.33
COL5A1P20908 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC12.96□□□□□ -0.33
COL5A1P20908 MIEF2-206ENST00000578174 589 ntTSL 4 BASIC12.96□□□□□ -0.33
COL5A1P20908 AC136475.1-203ENST00000602756 1034 ntTSL 3 BASIC12.96□□□□□ -0.33
COL5A1P20908 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
COL5A1P20908 AC138627.1-201ENST00000641127 1257 ntBASIC12.96□□□□□ -0.33
COL5A1P20908 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
COL5A1P20908 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC12.96□□□□□ -0.33
COL5A1P20908 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC12.96□□□□□ -0.33
COL5A1P20908 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
COL5A1P20908 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC12.96□□□□□ -0.33
COL5A1P20908 CNBP-207ENST00000502976 1626 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL5A1P20908 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL5A1P20908 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL5A1P20908 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
COL5A1P20908 FAM90A12P-201ENST00000519497 2375 ntBASIC12.96□□□□□ -0.34
COL5A1P20908 FAM90A24P-201ENST00000520792 2369 ntBASIC12.96□□□□□ -0.34
COL5A1P20908 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL5A1P20908 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL5A1P20908 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
COL5A1P20908 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL5A1P20908 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC12.96□□□□□ -0.34
COL5A1P20908 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
COL5A1P20908 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
COL5A1P20908 AL359878.1-201ENST00000381466 1886 ntTSL 2 BASIC12.96□□□□□ -0.34
COL5A1P20908 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
COL5A1P20908 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL5A1P20908 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL5A1P20908 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC12.95□□□□□ -0.34
COL5A1P20908 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
COL5A1P20908 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL5A1P20908 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC12.95□□□□□ -0.34
COL5A1P20908 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL5A1P20908 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL5A1P20908 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL5A1P20908 AC024475.2-201ENST00000312173 879 ntBASIC12.95□□□□□ -0.34
COL5A1P20908 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
COL5A1P20908 KRTAP10-11-201ENST00000334670 1237 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
COL5A1P20908 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL5A1P20908 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
COL5A1P20908 KRT8P6-201ENST00000399259 1207 ntBASIC12.95□□□□□ -0.34
COL5A1P20908 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC12.95□□□□□ -0.34
COL5A1P20908 SAP18P2-201ENST00000434334 459 ntBASIC12.95□□□□□ -0.34
COL5A1P20908 DDX11L8-201ENST00000535849 366 ntBASIC12.95□□□□□ -0.34
COL5A1P20908 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC12.95□□□□□ -0.34
COL5A1P20908 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC12.95□□□□□ -0.34
COL5A1P20908 IFNL3P1-201ENST00000595082 501 ntBASIC12.95□□□□□ -0.34
COL5A1P20908 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC12.95□□□□□ -0.34
COL5A1P20908 AL137028.2-201ENST00000614601 256 ntBASIC12.95□□□□□ -0.34
COL5A1P20908 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC12.95□□□□□ -0.34
COL5A1P20908 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC12.95□□□□□ -0.34
COL5A1P20908 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms