Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PPP1R2P4-201ENST00000424051 595 ntBASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 SLC25A15P3-201ENST00000505530 290 ntBASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 RNA5SP423-201ENST00000517127 109 ntBASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 NEU3-205ENST00000531619 582 ntTSL 5 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 AC079328.1-201ENST00000560358 952 ntBASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 TPM1-223ENST00000560445 485 ntTSL 3 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 TP53-221ENST00000615910 1149 ntTSL 5 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 AC103691.2-201ENST00000618824 433 ntBASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 DMBT1P1-203ENST00000636837 4628 ntBASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 HLA-DQB1-202ENST00000399079 1501 ntBASIC13.95□□□□□ -0.18
TRIM39Q9HCM9 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 AC068760.1-201ENST00000493579 1953 ntBASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 RCC2P1-201ENST00000452257 1476 ntBASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 LINC00265-2P-201ENST00000413372 782 ntBASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
TRIM39Q9HCM9 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 AC061965.1-201ENST00000560524 1465 ntBASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
TRIM39Q9HCM9 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms