Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCNA1P78396 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.74■□□□□ 0.11
CCNA1P78396 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC15.74■□□□□ 0.11
CCNA1P78396 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCNA1P78396 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCNA1P78396 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC15.74■□□□□ 0.11
CCNA1P78396 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.74■□□□□ 0.11
CCNA1P78396 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCNA1P78396 AP001267.2-201ENST00000532619 2086 ntBASIC15.74■□□□□ 0.11
CCNA1P78396 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CCNA1P78396 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.74■□□□□ 0.11
CCNA1P78396 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCNA1P78396 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCNA1P78396 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CCNA1P78396 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCNA1P78396 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCNA1P78396 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCNA1P78396 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC15.74■□□□□ 0.11
CCNA1P78396 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC15.74■□□□□ 0.11
CCNA1P78396 AC010086.2-201ENST00000428616 226 ntBASIC15.74■□□□□ 0.11
CCNA1P78396 RPS18P9-201ENST00000482817 460 ntBASIC15.74■□□□□ 0.11
CCNA1P78396 RPL29P2-201ENST00000488409 460 ntBASIC15.74■□□□□ 0.11
CCNA1P78396 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC15.74■□□□□ 0.11
CCNA1P78396 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCNA1P78396 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC15.74■□□□□ 0.11
CCNA1P78396 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC15.74■□□□□ 0.11
CCNA1P78396 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC15.74■□□□□ 0.11
CCNA1P78396 SRP14-208ENST00000560773 468 ntTSL 3 BASIC15.74■□□□□ 0.11
CCNA1P78396 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC15.74■□□□□ 0.11
CCNA1P78396 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC15.74■□□□□ 0.11
CCNA1P78396 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCNA1P78396 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCNA1P78396 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC15.74■□□□□ 0.11
CCNA1P78396 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CCNA1P78396 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCNA1P78396 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.74■□□□□ 0.11
CCNA1P78396 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CCNA1P78396 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.74■□□□□ 0.11
CCNA1P78396 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCNA1P78396 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
CCNA1P78396 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCNA1P78396 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC15.74■□□□□ 0.11
CCNA1P78396 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.73■□□□□ 0.11
CCNA1P78396 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CCNA1P78396 AC093462.1-201ENST00000621167 1683 ntBASIC15.73■□□□□ 0.11
CCNA1P78396 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.73■□□□□ 0.11
CCNA1P78396 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC15.73■□□□□ 0.11
CCNA1P78396 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC15.73■□□□□ 0.11
CCNA1P78396 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.73■□□□□ 0.11
CCNA1P78396 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CCNA1P78396 USP3-204ENST00000540797 5474 ntTSL 2 BASIC15.73■□□□□ 0.11
CCNA1P78396 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 AC136604.1-202ENST00000425471 771 ntBASIC15.73■□□□□ 0.11
CCNA1P78396 CD37-203ENST00000426897 1204 ntTSL 2 BASIC15.73■□□□□ 0.11
CCNA1P78396 KRT8P30-201ENST00000432100 650 ntBASIC15.73■□□□□ 0.11
CCNA1P78396 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC15.73■□□□□ 0.11
CCNA1P78396 ZNF877P-201ENST00000437614 612 ntBASIC15.73■□□□□ 0.11
CCNA1P78396 AL136084.1-201ENST00000449172 318 ntBASIC15.73■□□□□ 0.11
CCNA1P78396 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 BCL2L12P1-201ENST00000508390 733 ntBASIC15.73■□□□□ 0.11
CCNA1P78396 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC15.73■□□□□ 0.11
CCNA1P78396 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC15.73■□□□□ 0.11
CCNA1P78396 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC15.73■□□□□ 0.11
CCNA1P78396 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 AC120498.7-201ENST00000562876 330 ntBASIC15.73■□□□□ 0.11
CCNA1P78396 AC091304.3-201ENST00000566500 716 ntBASIC15.73■□□□□ 0.11
CCNA1P78396 AC079414.2-201ENST00000567157 1104 ntBASIC15.73■□□□□ 0.11
CCNA1P78396 MIR3940-201ENST00000579148 102 ntBASIC15.73■□□□□ 0.11
CCNA1P78396 MIR4746-201ENST00000579802 71 ntBASIC15.73■□□□□ 0.11
CCNA1P78396 MIR4254-201ENST00000581063 76 ntBASIC15.73■□□□□ 0.11
CCNA1P78396 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC15.73■□□□□ 0.11
CCNA1P78396 BAP1-211ENST00000615113 489 ntBASIC15.73■□□□□ 0.11
CCNA1P78396 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CCNA1P78396 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
CCNA1P78396 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC15.73■□□□□ 0.11
CCNA1P78396 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.73■□□□□ 0.11
CCNA1P78396 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CCNA1P78396 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 CICP24-201ENST00000605464 2705 ntBASIC15.73■□□□□ 0.11
CCNA1P78396 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CCNA1P78396 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms