Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC12.56□□□□□ -0.4
CNOT4O95628 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC12.56□□□□□ -0.4
CNOT4O95628 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC12.56□□□□□ -0.4
CNOT4O95628 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC12.56□□□□□ -0.4
CNOT4O95628 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC12.56□□□□□ -0.4
CNOT4O95628 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC12.56□□□□□ -0.4
CNOT4O95628 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 HLA-C-210ENST00000640219 976 ntBASIC12.56□□□□□ -0.4
CNOT4O95628 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC12.56□□□□□ -0.4
CNOT4O95628 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC12.56□□□□□ -0.4
CNOT4O95628 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC12.56□□□□□ -0.4
CNOT4O95628 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
CNOT4O95628 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 SCN8A-202ENST00000355133 5820 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CNOT4O95628 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC12.56□□□□□ -0.4
CNOT4O95628 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC12.56□□□□□ -0.4
CNOT4O95628 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC12.56□□□□□ -0.4
CNOT4O95628 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC12.55□□□□□ -0.4
CNOT4O95628 DNAJC24-202ENST00000465995 2004 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
CNOT4O95628 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC12.55□□□□□ -0.4
CNOT4O95628 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC12.55□□□□□ -0.4
CNOT4O95628 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC12.55□□□□□ -0.4
CNOT4O95628 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 POM121L4P-202ENST00000427789 1891 ntBASIC12.55□□□□□ -0.4
CNOT4O95628 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC12.55□□□□□ -0.4
CNOT4O95628 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC12.55□□□□□ -0.4
CNOT4O95628 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC12.55□□□□□ -0.4
CNOT4O95628 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC12.55□□□□□ -0.4
CNOT4O95628 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC12.55□□□□□ -0.4
CNOT4O95628 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC12.55□□□□□ -0.4
CNOT4O95628 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
CNOT4O95628 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
CNOT4O95628 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 BX679664.3-201ENST00000414070 555 ntBASIC12.55□□□□□ -0.4
CNOT4O95628 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC12.55□□□□□ -0.4
CNOT4O95628 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC12.55□□□□□ -0.4
CNOT4O95628 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 NAGK-204ENST00000443872 878 ntTSL 3 BASIC12.55□□□□□ -0.4
CNOT4O95628 AC114501.1-201ENST00000445949 172 ntBASIC12.55□□□□□ -0.4
CNOT4O95628 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC12.55□□□□□ -0.4
CNOT4O95628 AC113935.1-201ENST00000471722 555 ntBASIC12.55□□□□□ -0.4
CNOT4O95628 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC12.55□□□□□ -0.4
CNOT4O95628 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC12.55□□□□□ -0.4
CNOT4O95628 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC12.55□□□□□ -0.4
CNOT4O95628 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 ELP5-212ENST00000574255 671 ntTSL 2 BASIC12.55□□□□□ -0.4
CNOT4O95628 AC009560.1-201ENST00000620208 434 ntBASIC12.55□□□□□ -0.4
CNOT4O95628 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC12.55□□□□□ -0.4
CNOT4O95628 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
CNOT4O95628 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC12.55□□□□□ -0.4
CNOT4O95628 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 HSPA8P5-201ENST00000456928 2069 ntBASIC12.55□□□□□ -0.4
CNOT4O95628 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CNOT4O95628 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms