Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 AC018463.1-201ENST00000456674 917 ntBASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 BUD31-205ENST00000456893 512 ntTSL 5 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 MIR4649-201ENST00000582839 64 ntBASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 AP000322.3-201ENST00000608665 388 ntBASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 AC025262.2-201ENST00000623975 1056 ntBASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 AC073911.3-201ENST00000624401 631 ntBASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 AC006372.4-201ENST00000624122 1543 ntBASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 AL928921.2-201ENST00000641325 2442 ntBASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 TP73-211ENST00000604074 4806 ntTSL 5 BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
NPIPA3F8WFD2 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 MST1P2-201ENST00000457982 2291 ntBASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 AC090643.2-201ENST00000623442 2029 ntBASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 BAX-205ENST00000391871 687 ntTSL 5 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 AC006987.1-201ENST00000413610 527 ntBASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 AL512306.1-201ENST00000432698 848 ntBASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 ERP29P1-201ENST00000442902 706 ntBASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 AL512310.5-201ENST00000551999 515 ntBASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 RN7SL470P-201ENST00000583069 259 ntBASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 SIGLEC22P-201ENST00000599104 714 ntBASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 AL021707.6-201ENST00000609212 491 ntBASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 AL161773.1-201ENST00000624845 863 ntBASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
NPIPA3F8WFD2 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms