Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC10.9□□□□□ -0.66
CXCL1P09341 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC10.9□□□□□ -0.66
CXCL1P09341 METTL23-205ENST00000588302 925 ntTSL 5 BASIC10.9□□□□□ -0.66
CXCL1P09341 AL049840.4-201ENST00000602422 811 ntBASIC10.9□□□□□ -0.66
CXCL1P09341 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
CXCL1P09341 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC10.9□□□□□ -0.66
CXCL1P09341 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC10.9□□□□□ -0.66
CXCL1P09341 AL136317.3-201ENST00000618497 906 ntBASIC10.9□□□□□ -0.66
CXCL1P09341 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC10.9□□□□□ -0.66
CXCL1P09341 PRPF6-201ENST00000266079 3044 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
CXCL1P09341 AC099786.2-201ENST00000427892 2203 ntTSL 2 BASIC10.9□□□□□ -0.66
CXCL1P09341 METTL12-203ENST00000532971 2037 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
CXCL1P09341 TMEM18-201ENST00000281017 2762 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
CXCL1P09341 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CXCL1P09341 CEP112-202ENST00000392769 3517 ntAPPRIS P4 TSL 5 BASIC10.9□□□□□ -0.66
CXCL1P09341 TSPEAR-203ENST00000613245 3524 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CXCL1P09341 SLC46A1-207ENST00000612814 6376 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
CXCL1P09341 ATG13-211ENST00000528494 2351 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
CXCL1P09341 HNF1A-208ENST00000541395 3332 ntTSL 2 BASIC10.9□□□□□ -0.66
CXCL1P09341 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
CXCL1P09341 ATP1A1-201ENST00000295598 3654 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
CXCL1P09341 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.67
CXCL1P09341 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.67
CXCL1P09341 TMX1-201ENST00000457354 3995 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
CXCL1P09341 AGPAT1-204ENST00000395496 2103 ntAPPRIS P1 TSL 3 BASIC10.9□□□□□ -0.67
CXCL1P09341 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.67
CXCL1P09341 OGFR-202ENST00000370461 4506 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.67
CXCL1P09341 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.67
CXCL1P09341 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.67
CXCL1P09341 ST3GAL6-228ENST00000613264 3399 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
CXCL1P09341 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 PDE1B-203ENST00000538346 1711 ntTSL 2 BASIC10.89□□□□□ -0.67
CXCL1P09341 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 PNMA5-201ENST00000361887 3197 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
CXCL1P09341 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 SMG6-203ENST00000536871 1865 ntTSL 2 BASIC10.89□□□□□ -0.67
CXCL1P09341 MIGA2-201ENST00000358369 3637 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 PML-207ENST00000435786 3643 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 SUCLG2-201ENST00000307227 2352 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 ENOX2-201ENST00000338144 4263 ntTSL 2 BASIC10.89□□□□□ -0.67
CXCL1P09341 TRIM68-201ENST00000300747 3352 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 LINC02202-201ENST00000499583 2664 ntTSL 2 BASIC10.89□□□□□ -0.67
CXCL1P09341 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
CXCL1P09341 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 TEX30-203ENST00000376022 828 ntTSL 2 BASIC10.89□□□□□ -0.67
CXCL1P09341 MIR574-201ENST00000385209 96 ntBASIC10.89□□□□□ -0.67
CXCL1P09341 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC10.89□□□□□ -0.67
CXCL1P09341 FABP5-202ENST00000396359 986 ntTSL 5 BASIC10.89□□□□□ -0.67
CXCL1P09341 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC10.89□□□□□ -0.67
CXCL1P09341 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC10.89□□□□□ -0.67
CXCL1P09341 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC10.89□□□□□ -0.67
CXCL1P09341 FAM86LP-201ENST00000478302 853 ntBASIC10.89□□□□□ -0.67
CXCL1P09341 DENND3-221ENST00000523308 2959 ntTSL 2 BASIC10.89□□□□□ -0.67
CXCL1P09341 AC069120.2-201ENST00000524091 540 ntBASIC10.89□□□□□ -0.67
CXCL1P09341 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC10.89□□□□□ -0.67
CXCL1P09341 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC10.89□□□□□ -0.67
CXCL1P09341 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC10.89□□□□□ -0.67
CXCL1P09341 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC10.89□□□□□ -0.67
CXCL1P09341 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC10.89□□□□□ -0.67
CXCL1P09341 AL844908.2-201ENST00000609461 460 ntBASIC10.89□□□□□ -0.67
CXCL1P09341 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
CXCL1P09341 GGTA1P-205ENST00000495328 3478 ntTSL 2 BASIC10.89□□□□□ -0.67
CXCL1P09341 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC10.89□□□□□ -0.67
CXCL1P09341 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 ARHGEF9-220ENST00000635729 1761 ntTSL 5 BASIC10.89□□□□□ -0.67
CXCL1P09341 PRKCQ-201ENST00000263125 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 PHB-215ENST00000617874 1908 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
CXCL1P09341 STXBP1-221ENST00000637953 3925 ntTSL 5 BASIC10.89□□□□□ -0.67
CXCL1P09341 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC10.89□□□□□ -0.67
CXCL1P09341 SOX13-203ENST00000367204 3587 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC10.89□□□□□ -0.67
CXCL1P09341 ZNF606-201ENST00000341164 4248 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 KLHL7-202ENST00000339077 5620 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC10.89□□□□□ -0.67
CXCL1P09341 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC10.89□□□□□ -0.67
CXCL1P09341 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
CXCL1P09341 ANKZF1-203ENST00000410034 2486 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
CXCL1P09341 SALL4P6-201ENST00000429385 1691 ntBASIC10.89□□□□□ -0.67
CXCL1P09341 MRPS16-202ENST00000372945 2634 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 FCHO1-221ENST00000597512 2934 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 AC137834.1-201ENST00000548184 2107 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
CXCL1P09341 CYP11B1-203ENST00000377675 2280 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
CXCL1P09341 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms