Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 AL606495.2-201ENST00000605867 535 ntBASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 AL136370.1-201ENST00000608166 691 ntBASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 BX088702.1-201ENST00000610784 235 ntBASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 AC145423.3-201ENST00000615987 467 ntBASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 CMIP-208ENST00000566462 3512 ntTSL 4 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 SLC8A3-205ENST00000394330 2622 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
DEPDC4Q8N2C3 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 AL805961.2-201ENST00000642139 4817 ntBASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 AL445209.1-201ENST00000607269 3491 ntBASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 ABI1-213ENST00000536334 3380 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 BRWD1P1-201ENST00000401091 371 ntBASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 ACTBP8-201ENST00000403258 1108 ntBASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 CSF2RBP1-201ENST00000447905 391 ntBASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 SNX29P1-201ENST00000548357 1007 ntBASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 AC025279.2-201ENST00000569730 653 ntBASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 AL355102.3-201ENST00000554299 1678 ntBASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 AL359845.1-201ENST00000458202 1648 ntBASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
DEPDC4Q8N2C3 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 BDH1-201ENST00000358186 3330 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 AGAP12P-201ENST00000585227 2359 ntBASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
DEPDC4Q8N2C3 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms