Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PPP3CB-204ENST00000394829 3149 ntAPPRIS P4 TSL 1 (best) BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 TNFSF13B-201ENST00000375887 2582 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 TBC1D3P5-203ENST00000586223 3083 ntTSL 2 BASIC8.65□□□□□ -1.03
LINC00643Q86TS7 MTMR3-203ENST00000351488 4464 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 DNMBP-201ENST00000324109 6400 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 INHBC-201ENST00000309668 1992 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 AC024560.1-201ENST00000424493 1471 ntTSL 3 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 GNAT1-201ENST00000232461 2417 ntAPPRIS P1 TSL 5 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 TSNAXIP1-201ENST00000388833 2429 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 TRIM36-207ENST00000513154 4218 ntTSL 2 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 AC073578.3-201ENST00000624926 4191 ntBASIC8.64□□□□□ -1.03
LINC00643Q86TS7 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 ZNF189-203ENST00000374861 3134 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 TATDN2P2-201ENST00000403590 2226 ntBASIC8.64□□□□□ -1.03
LINC00643Q86TS7 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 NAV2-201ENST00000349880 10960 ntAPPRIS ALT1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 BCL2L13-215ENST00000611738 4817 ntTSL 4 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 HDGF-203ENST00000368209 2171 ntTSL 2 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 HHIPL2-201ENST00000343410 2575 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 NOL10-205ENST00000538384 3418 ntTSL 2 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 AC068775.1-201ENST00000322446 2142 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 COPE-203ENST00000351079 907 ntTSL 2 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 HLA-H-201ENST00000383620 1096 ntBASIC8.64□□□□□ -1.03
LINC00643Q86TS7 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 BX005266.1-201ENST00000473402 457 ntBASIC8.64□□□□□ -1.03
LINC00643Q86TS7 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 AC109635.5-201ENST00000533593 962 ntBASIC8.64□□□□□ -1.03
LINC00643Q86TS7 ABR-204ENST00000543210 1049 ntTSL 2 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 AL031432.2-201ENST00000566714 459 ntBASIC8.64□□□□□ -1.03
LINC00643Q86TS7 AL928711.1-201ENST00000570165 459 ntBASIC8.64□□□□□ -1.03
LINC00643Q86TS7 ABR-217ENST00000572441 563 ntTSL 4 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 MIR3180-1-201ENST00000580374 94 ntBASIC8.64□□□□□ -1.03
LINC00643Q86TS7 MIR3180-3-201ENST00000584616 94 ntBASIC8.64□□□□□ -1.03
LINC00643Q86TS7 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 GIMAP1-GIMAP5-201ENST00000611999 2148 ntAPPRIS P1 TSL 5 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 AC141257.4-201ENST00000634557 245 ntBASIC8.64□□□□□ -1.03
LINC00643Q86TS7 AC136944.6-201ENST00000634818 245 ntBASIC8.64□□□□□ -1.03
LINC00643Q86TS7 HLA-C-210ENST00000640219 976 ntBASIC8.64□□□□□ -1.03
LINC00643Q86TS7 AC138749.1-201ENST00000567652 2472 ntBASIC8.64□□□□□ -1.03
LINC00643Q86TS7 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 C1S-221ENST00000617865 2844 ntTSL 5 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 ASIC2-202ENST00000359872 3179 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 SLC38A1-206ENST00000549049 3196 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 RAD52-204ENST00000430095 2366 ntAPPRIS P3 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 KXD1-217ENST00000602094 2738 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 AC018512.1-201ENST00000417761 2326 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 RUNX2-AS1-201ENST00000563807 1513 ntTSL 5 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 G2E3-212ENST00000553504 3796 ntTSL 5 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 UCP3-201ENST00000314032 2623 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 OSBP2-204ENST00000407373 3669 ntAPPRIS ALT2 TSL 2 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 ARHGAP27-212ENST00000532038 3694 ntAPPRIS ALT2 TSL 5 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 UBXN4-201ENST00000272638 4006 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 SLC22A14-202ENST00000448498 1827 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC8.64□□□□□ -1.03
LINC00643Q86TS7 TRAK1-206ENST00000449246 3260 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 UBIAD1-202ENST00000376810 3646 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 BCL2L13-207ENST00000418951 5062 ntTSL 3 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 CDH2-201ENST00000269141 4332 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 HKR1-204ENST00000544914 2854 ntTSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 SLC17A9-202ENST00000370351 3580 ntAPPRIS P3 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 RIPOR1-205ENST00000540839 4260 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 PUDP-201ENST00000381077 2140 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 LINC00319-202ENST00000448049 3507 ntTSL 5 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 NBPF1-204ENST00000432949 4176 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 TPM3-223ENST00000611659 3149 ntTSL 3 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 AC019294.1-202ENST00000566174 2071 ntBASIC8.63□□□□□ -1.03
LINC00643Q86TS7 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 FSTL1-202ENST00000424703 1396 ntTSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 DNASE1-202ENST00000407479 8552 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 ATP6V1G2-DDX39B-201ENST00000376185 2039 ntAPPRIS P1 TSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 ABCB8-222ENST00000542328 4371 ntTSL 2 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 MED24-212ENST00000501516 3037 ntTSL 5 BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 XIRP1-202ENST00000396251 6040 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 CRYZ-205ENST00000417775 2301 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 IQGAP3-201ENST00000361170 5988 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 GRK1-201ENST00000335678 4296 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 AP1G2-202ENST00000397120 2609 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
LINC00643Q86TS7 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms