Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
RHBDL3P58872 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RHBDL3P58872 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
RHBDL3P58872 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
RHBDL3P58872 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
RHBDL3P58872 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
RHBDL3P58872 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC16.35■□□□□ 0.21
RHBDL3P58872 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC16.35■□□□□ 0.21
RHBDL3P58872 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RHBDL3P58872 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC16.35■□□□□ 0.21
RHBDL3P58872 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC16.35■□□□□ 0.21
RHBDL3P58872 TBC1D3P6-201ENST00000505954 962 ntBASIC16.35■□□□□ 0.21
RHBDL3P58872 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC16.35■□□□□ 0.21
RHBDL3P58872 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC16.35■□□□□ 0.21
RHBDL3P58872 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC16.35■□□□□ 0.21
RHBDL3P58872 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC16.35■□□□□ 0.21
RHBDL3P58872 URAHP-205ENST00000610227 398 ntBASIC16.35■□□□□ 0.21
RHBDL3P58872 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC16.35■□□□□ 0.21
RHBDL3P58872 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RHBDL3P58872 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RHBDL3P58872 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
RHBDL3P58872 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.35■□□□□ 0.21
RHBDL3P58872 KRT8P42-201ENST00000405771 1399 ntBASIC16.35■□□□□ 0.21
RHBDL3P58872 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC16.35■□□□□ 0.21
RHBDL3P58872 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RHBDL3P58872 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
RHBDL3P58872 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
RHBDL3P58872 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RHBDL3P58872 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC16.35■□□□□ 0.21
RHBDL3P58872 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RHBDL3P58872 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RHBDL3P58872 LINC01230-201ENST00000625222 3017 ntBASIC16.35■□□□□ 0.21
RHBDL3P58872 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RHBDL3P58872 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC16.34■□□□□ 0.21
RHBDL3P58872 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
RHBDL3P58872 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
RHBDL3P58872 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
RHBDL3P58872 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
RHBDL3P58872 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC16.34■□□□□ 0.21
RHBDL3P58872 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC16.34■□□□□ 0.21
RHBDL3P58872 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC16.34■□□□□ 0.21
RHBDL3P58872 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC16.34■□□□□ 0.21
RHBDL3P58872 ZNF877P-201ENST00000437614 612 ntBASIC16.34■□□□□ 0.21
RHBDL3P58872 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC16.34■□□□□ 0.21
RHBDL3P58872 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
RHBDL3P58872 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 SEPHS2P1-201ENST00000511618 1162 ntBASIC16.34■□□□□ 0.21
RHBDL3P58872 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC16.34■□□□□ 0.21
RHBDL3P58872 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC16.34■□□□□ 0.21
RHBDL3P58872 ABHD17AP9-201ENST00000561925 548 ntBASIC16.34■□□□□ 0.21
RHBDL3P58872 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC16.34■□□□□ 0.21
RHBDL3P58872 TYMSP2-201ENST00000589501 424 ntBASIC16.34■□□□□ 0.21
RHBDL3P58872 AL356740.1-201ENST00000602192 1297 ntBASIC16.34■□□□□ 0.21
RHBDL3P58872 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC16.34■□□□□ 0.21
RHBDL3P58872 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 AC073869.1-201ENST00000415574 2762 ntBASIC16.34■□□□□ 0.21
RHBDL3P58872 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.34■□□□□ 0.21
RHBDL3P58872 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RHBDL3P58872 AC024075.2-201ENST00000598112 1473 ntBASIC16.34■□□□□ 0.21
RHBDL3P58872 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
RHBDL3P58872 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
RHBDL3P58872 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
RHBDL3P58872 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC16.34■□□□□ 0.21
RHBDL3P58872 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC16.34■□□□□ 0.21
RHBDL3P58872 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RHBDL3P58872 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
RHBDL3P58872 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC16.33■□□□□ 0.21
RHBDL3P58872 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RHBDL3P58872 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
RHBDL3P58872 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
RHBDL3P58872 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
RHBDL3P58872 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RHBDL3P58872 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC16.33■□□□□ 0.21
RHBDL3P58872 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RHBDL3P58872 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.33■□□□□ 0.21
RHBDL3P58872 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
RHBDL3P58872 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
RHBDL3P58872 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC16.33■□□□□ 0.21
RHBDL3P58872 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
RHBDL3P58872 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RHBDL3P58872 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RHBDL3P58872 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
RHBDL3P58872 ZNF436-AS1-201ENST00000335648 2547 ntBASIC16.33■□□□□ 0.2
RHBDL3P58872 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RHBDL3P58872 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms