Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLDN6P56747 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CLDN6P56747 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
CLDN6P56747 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLDN6P56747 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLDN6P56747 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CLDN6P56747 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CLDN6P56747 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CLDN6P56747 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 MTHFR-210ENST00000641407 2387 ntBASIC13.47□□□□□ -0.25
CLDN6P56747 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CLDN6P56747 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
CLDN6P56747 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 AC005089.1-201ENST00000619486 2241 ntBASIC13.47□□□□□ -0.25
CLDN6P56747 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
CLDN6P56747 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.47□□□□□ -0.25
CLDN6P56747 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.47□□□□□ -0.25
CLDN6P56747 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 NHP2P1-201ENST00000335274 462 ntBASIC13.47□□□□□ -0.25
CLDN6P56747 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CLDN6P56747 OR10N1P-201ENST00000392758 869 ntBASIC13.47□□□□□ -0.25
CLDN6P56747 AC092570.1-201ENST00000414446 469 ntBASIC13.47□□□□□ -0.25
CLDN6P56747 PGAM1P11-201ENST00000416729 680 ntBASIC13.47□□□□□ -0.25
CLDN6P56747 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC13.47□□□□□ -0.25
CLDN6P56747 AL080243.1-201ENST00000423293 1060 ntBASIC13.47□□□□□ -0.25
CLDN6P56747 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC13.47□□□□□ -0.25
CLDN6P56747 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC13.47□□□□□ -0.25
CLDN6P56747 RPL3P5-201ENST00000441645 1232 ntBASIC13.47□□□□□ -0.25
CLDN6P56747 SEPHS2P1-201ENST00000511618 1162 ntBASIC13.47□□□□□ -0.25
CLDN6P56747 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC13.47□□□□□ -0.25
CLDN6P56747 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC13.47□□□□□ -0.25
CLDN6P56747 BATF-202ENST00000555504 361 ntTSL 2 BASIC13.47□□□□□ -0.25
CLDN6P56747 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC13.47□□□□□ -0.25
CLDN6P56747 EMC4-208ENST00000559078 599 ntTSL 3 BASIC13.47□□□□□ -0.25
CLDN6P56747 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC13.47□□□□□ -0.25
CLDN6P56747 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC13.47□□□□□ -0.25
CLDN6P56747 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC13.47□□□□□ -0.25
CLDN6P56747 AC004686.1-201ENST00000605113 538 ntBASIC13.47□□□□□ -0.25
CLDN6P56747 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CLDN6P56747 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC13.47□□□□□ -0.25
CLDN6P56747 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CLDN6P56747 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.47□□□□□ -0.25
CLDN6P56747 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 AC138761.6-201ENST00000583997 1423 ntBASIC13.47□□□□□ -0.25
CLDN6P56747 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.47□□□□□ -0.25
CLDN6P56747 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.47□□□□□ -0.25
CLDN6P56747 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CLDN6P56747 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CLDN6P56747 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLDN6P56747 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC13.46□□□□□ -0.25
CLDN6P56747 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLDN6P56747 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.46□□□□□ -0.25
CLDN6P56747 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC13.46□□□□□ -0.25
CLDN6P56747 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
CLDN6P56747 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLDN6P56747 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLDN6P56747 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLDN6P56747 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.46□□□□□ -0.25
CLDN6P56747 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC13.46□□□□□ -0.25
CLDN6P56747 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
CLDN6P56747 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
CLDN6P56747 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLDN6P56747 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.46□□□□□ -0.25
CLDN6P56747 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLDN6P56747 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.46□□□□□ -0.25
CLDN6P56747 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.46□□□□□ -0.25
CLDN6P56747 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.46□□□□□ -0.25
CLDN6P56747 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CLDN6P56747 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
CLDN6P56747 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
CLDN6P56747 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
CLDN6P56747 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC13.46□□□□□ -0.25
CLDN6P56747 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CLDN6P56747 RN7SL147P-201ENST00000487345 298 ntBASIC13.46□□□□□ -0.25
CLDN6P56747 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC13.46□□□□□ -0.25
CLDN6P56747 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC13.46□□□□□ -0.25
CLDN6P56747 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CLDN6P56747 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms